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作者： Nery, Alexandre S. Nedjah, Nadia França, Felipe M.G. LAM - Computer Architecture and Microeletronics Laboratory Systems Engineering and Computer Science Program COPPE Universidade Federal Do Rio de Janeiro Rio de Janeiro RJ Brazil Department of Electronics Engineering and Telecommunications Faculty of Engineering Universidade Do Estado Do Rio de Janeiro Rio de Janeiro RJ Brazil

Real time rendering of three-dimensional scenes in high photorealistic details is a hard task, such as in the ray tracing rendering algorithm. In general, the performance achieved by a sequential software-based implementation of ray tracing is far from satisfactory. However, parallel implementations of ray tracing have been enabling reasonable real time performance, as the algorithm is embarrassingly parallel. Thus, a custom parallel design in hardware is likely to achieve an even higher performance. In this paper, we propose a hardware parallel architecture capable of dealing with the main desirable features of ray tracing, such as shadows and reflection effects, imposing low area cost and a promising rendering performance. Such architecture, called GridRT, is based on the Uniform Grid acceleration structure and is intended to deliver massive parallelism through parallel ray-triangle intersection tests as well as parallel processing of many rays. A hardware implementation of the proposed architecture is presented, together with some performance results and resources requirements. The rendering is reduced by 80% using a grid configuration of eight processing elements. © Springer science+Business Media, LLC 2011.

关键词： Field programmable gate arrays (FPGA)

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Introducing Software Process Tailoring to BPMN: BPMNt

Introducing Software Process Tailoring to BPMN: BPMNt

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International Conference on Software and System Process (ICSSP)

作者： Raquel M. Pillat Toacy C. Oliveira Fabio L. Fonseca Systems Engineering and Computer Science Program-PESC / COPPE Federal University of Rio de Janeiro Rio de Janeiro Brazil

BPMN 2.0 is a widely used notation to model business process that has associated tools and techniques to facilitate process management, execution and monitoring. As a result using BPMN to model Software Development Process (SDP) can leverage on the BPMN's infrastructure to improve SDP quality. Nevertheless, when using BPMN to model Software Processes one can observe the lack of an important feature: means to represent process tailoring. This article introduces the BPMNt, a conservative extension to BPMN that aims at aggregating a tailoring representation mechanism as the one found at SPEM 2.0. BPMNt uses the extensibility classes already present in the BPMN meta-model. Our work also presents an example to illustrate the approach.

关键词： Software Business Unified modeling language programming Adaptation models Standards Semantics

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The Use of Support Vector Machine and Genetic Algorithms to Predict Protein Function

The Use of Support Vector Machine and Genetic Algorithms to ...

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IEEE International Conference on systems, Man, and Cybernetics

作者： Walkiria K. Resende Renato A. Nascimento Carolina R. Xavier Iara F. Lopes Cristianc N. Nobre Department of Computer Science Universidade Federal de Sao Joao del Rei - UFSJ Department of Computer Science Pontificia Universidade Catolica de Minas Gerais PUC/MG Civil Engineering Program COPPE - UFRJ

ISBN: (纸本)9781467317139

In Bio informatics, the prediction of protein function is considered a very important task but also difficult. Using a set of enzymes represented by Hydrolase, Isomerase, Ligase, Lyase, Transferase and Oxidoreductase classes, previously used by Dobson et ah, this paper proposes a self-learning process able to predict their classes, based on their primary and secondary structures, through a Support Vector Machine (SVM) classifier and genetic algorithm. An SVM can he characterized as a supervised machine learning algorithm capable of resolving linear and non-linear classification problems. During the learning process, both the training data and the corresponding output are presented to the SVM to allow its parameters to he adjusted. This study utilized genetic algorithms - optimization heuristics often used to estimate parameters - to adjust the main parameters of the classifier such as kernel function type and parameter C, which provides the relationship between the training error and the margin of separation between classes. In this specific prediction problem, the results indicate that the best function is an RBF where width is 6.1 and C is 6.9. Using these parameters, the classifier obtains an average accuracy of 79.74%.

关键词： Component: Proteins Prediction Support Vector Machine Genetic Algorithms protein structure function Support Vector Network Genetic Algorithm (GA) Classifiers Learning processes secondary structures

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Multiobjective optimization for project portfolio selection 12

Multiobjective optimization for project portfolio selection

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14th International Conference on Genetic and Evolutionary Computation Companion, GECCO'12 Companion

作者： De Barros, Márcio O. Costa, Hélio R. Figueiredo, Fábio V. Da Rocha, Ana Regina C. Post-graduate Information Systems Program - PPGI UNIRIO Av. Pasteur 458 Urca - Rio de Janeiro RJ Brazil COPPE UFRJ System Engineering and Computer Science Department Caixa Postal: 68511 CEP: 21945-970 - Rio de Janeiro Brazil CCA-RJ Brazilian Air Force Ponta do Galeão s/no Ilha do Governador CEP: 21941-510 - Rio de Janeiro Brazil

ISBN: (纸本)9781450311786

This paper proposes a multiobjective heuristic search approach to support a project portfolio selection technique on scenarios with a large number of candidate projects. The original formulation for the technique requires analyzing all combinations of candidate projects, which is unfeasible when more than a few alternatives are available. We have used a multiobjective genetic algorithm to partially explore the search space of project combinations and select the most effective ones. We present an experimental study based on four project selection problems that compares the results found by the genetic algorithm to those yielded by a non-systematic search procedure. Results show evidence that the project selection technique can be used in large-scale scenarios and that GA presents better results than simpler search strategy. Copyright is held by the author/owner(s).

关键词： Multiobjective optimization

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Awareness and Comprehension in Software/systems engineering Practice and Education: Trends and Research Directions

Awareness and Comprehension in Software/Systems Engineering ...

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Brazilian Symposium on Software engineering (SBES)

作者： Marcelo Schots Cl'udia Werner Manoel Mendonça Systems Engineering and Computing Program COPPE Federal University of Rio de Janeiro Rio de Janeiro Brazil Computer Science Department Federal University of Bahia Rio de Janeiro Brazil

The creation of tools, techniques and methodologies to support the manipulation of large data sets has been receiving special attention of both scientific and industrial communities, in order to discover new ways of dealing with the underlying information, including learning purposes, identification of patterns, decision making support, amongst others. However, making use of computing resources to enhance awareness and understanding of software information and the software itself is still a challenge in software/systems engineering, since it involves the identification of suitable mechanisms, adequate abstractions, and studies on stimulation of the human perceptive and cognitive abilities. This paper presents some of the challenges in this context, based on current trends of software development lifecycle, program comprehension, and software engineering education. At the end, a special focus is given on ongoing research on using and improving current mechanisms for supporting software reuse practices and software comprehension in general.

关键词： Software Software engineering Education Visualization Conferences Industries Data visualization

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PatternLab: From mass spectra to label-free differential shotgun proteomics

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Current Protocols in Bioinformatics 2012年第SUPPL.40期40卷

作者： Carvalho, Paulo C. Fischer, Juliana S.G. Xu, Tao Yates III, John R. Barbosa, Valmir C. Carlos Chagas Institute-Fiocruz Parańa Brazil Department of Cell Biology The Scripps Research Institute La Jolla CA United States Systems Engineering and Computer Science Program COPPE Federal University of Rio de Janeiro Brazil

PatternLab for proteomics is a self-contained computational environment for analyzing shotgun proteomic data. Recent improvements incorporate modules to facilitate the computational analysis, such as FastaDBXtractor for sequence database preparation and ProLuCID runner for simplifying and managing the protein identification search engine;modules for pushing the limits on proteomics standards, such as SEPro, which relies on a semi-labeled decoy approach for increasing confidence in filtering and organizing peptide spectrum matches;and modules with novel features, such as SEProQ for enabling labelfree quantitation by extracted ion chromatograms according to a distributed normalized ion abundance factor approach (dNIAF). Existing modules were also improved, such as the TFold module for pinpointing differentially expressed proteins. These new modules are integrated into the previously described arsenal of tools for further data analysis. Here we provide detailed instructions for operating and understanding them. © 2012 by John Wiley & Sons, Inc.

关键词： Dniaf filtering PSMs Protein identification Quantitative proteomics Semi-labeled decoy approach

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Dynamic process adaptation: A context-aware approach

Dynamic process adaptation: A context-aware approach

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International Conference on computer Supported Cooperative Work in Design

作者： Nunes, Vanessa Tavares Werner, Cláudia M. Lima Santoro, Flávia Maria COPPE/PESC - Systems Engineering and Computer Science Program - UFRJ PO Box 68511 21945-970 Rio de Janeiro Brazil NP2Tec and Postgraduate Information Systems Program UNIRIO Rio de Janeiro Brazil

ISBN: (纸本)9781457703874

Dynamism of day-to-day activities in organizations is inextricably linked and there is a variety of information, insight and reasoning being processed between people and systems, in carrying out a business process. We argue that flexibility in processes could be managed in real time, using context information collected in the work environment. This paper proposes a context management architecture approach that aims to improve and automate dynamic process adaptation. We explain how process adaptation may occur in real time and discuss a scenario for this proposal © 2011 IEEE.

关键词： Process design

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A roadmap to the Collaboration Maturity Model (CollabMM) evolution

A roadmap to the Collaboration Maturity Model (CollabMM) evo...

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International Conference on computer Supported Cooperative Work in Design

作者： Magdaleno, Andréa Magalhães Araujo, Renata Mendes De Werner, Cláudia Maria Lima System Engineering and Computer Science Program - COPPE/UFRJ Rio de Janeiro RJ Brazil PPGI - Graduate Program in Informatics - UNIRIO Rio de Janeiro RJ Brazil

ISBN: (纸本)9781457703874

Organizations have been relying on collaboration for productivity improvement and knowledge sharing. The first step to foster collaboration in organizations is to make it explicit. With this aim, the Collaboration Maturity Model (CollabMM) was proposed and evaluated. The lessons learned during model applications in previous work pointed out the need to review both the model and its evaluation instruments. A literature review also showed some improvement opportunities. Therefore, the objective of this work is to develop a roadmap to highlight the main opportunities of evolution in CollabMM. These opportunities will compose our research agenda in this topic and guide future work. © 2011 IEEE.

关键词： Productivity

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Porantim-opt: Optimizing the combined selection of model-based testing techniques

Porantim-opt: Optimizing the combined selection of model-bas...

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Workshop on Requirements and Validation, Verification, and Testing

作者： Neto, Arilo Claudio Dias De Freitas Rodrigues, Rosiane Travassos, Guilherme Horta Post-graduation Program In Informatics Computer Science Department Federal University of Amazonas Manaus AM Brazil Systems Engineering and Computer Science Program COPPE Federal University of Rio De Janeiro Rio De Janeiro RJ Brazil

ISBN: (纸本)9780769543451

The combination of testing techniques is considered an effective strategy to evaluate a software product. However, the selection of which techniques to combine in a software project has been an interesting challenge in the Software engineering field. This paper presents a proposal extending an approach developed to support the combined selection of model-based testing (MBT) techniques, named Porantim, applying Multiobjective Combinatorial Optimization strategy by determining the smallest dominating set in a bipartite and weighted graph. Thus, a local search strategy algorithm is proposed generating solutions aiming at maximizing the coverage of software project characteristics and skills required by the testing team to use the techniques and minimizing the eventual effort to construct models used for test cases generation. A preliminary evaluation analyzes this new approach when compared to the Porantim's original version, and the results indicate improvements in the MBT techniques selection. © 2011 IEEE.

关键词： Software testing

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A parallel Ray Tracing architecture suitable for application-specific hardware and GPGPU implementations

A parallel Ray Tracing architecture suitable for application...

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2011 14th Euromicro Conference on Digital System Design: Architectures, Methods and Tools, DSD 2011

作者： Nery, Alexandre S. Nedjah, Nadia Franca, Felipe M.G. Jozwiak, Lech LAM - Computer Architecture and Microelectronics Laboratory Systems Engineering and Computer Science Program COPPE Universidade Federal Rio de Janeiro Brazil Department of Electronics Engineering and Telecommunications Faculty of Engineering Universidade do Estado Rio de Janeiro Brazil Department of Electrical Engineering - Electronic Systems Eindhoven University of Technology Netherlands

ISBN: (纸本)9780769544946

The Ray Tracing rendering algorithm can produce high-fidelity images of 3-D scenes, including shadow effects, as well as reflections and transparencies. This is currently done at a processing speed of at most 30 frames per second. Therefore, actual implementations of the algorithm are not yet suitable for interactive real-time rendering, which is required in games and virtual reality based applications. Fortunately, the algorithm allows for massive parallelization of its computations. In this paper, we present a parallel architecture for ray tracing based on a uniform spatial subdivision of the scene and exploiting an embedded computation of ray-triangle intersections. This approach allows for a significant acceleration of intersection computations, as well as, a reduction of the total number of the required intersections checks. Furthermore, it allows for these checks to be performed in parallel and in advance for each ray. In this paper we discuss and analyze an ASIP-based implementation using FPGAs and a GPGPU-based parallel implementation of the proposed architecture. The performance of both implementations are reported and compared." © 2011 IEEE.

关键词： Ray tracing

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