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10th International Conference on ICT for Smart Society, ICISS 2019

作者： Zulkarnain, Novan Kosala, Raymond Ranti, Benny Supangkat, Suhono Harso Bina Nusantara University Computer Science Department BINUS Graduate Program Doctor of Computer Science Information Systems Department Jakarta11480 Indonesia Universitas Indonesia Computer Science Department Depok16424 Indonesia Institute of Technology Bandung School of Electrical and Informatics Engineering Bandung40132 Indonesia

ISBN: (纸本)9781728148809

There have been many studies conducted related to Smart City, IT Governance and Big Data. In this study aims to find out how the relationship between the three and how to form a framework to explain it. The methodology used is qualitative by looking for some literature on smart city framework, IT Governance framework, and a Big Data framework. From these results, an overall picture of the relationship between the three is concluded, where Big Data has a role in IT Governance. and also the relationship of IT Governance to the realization of Smart City. And the final results of this study produce a framework to explain the relationship between Smart City, IT Governance and Big Data. © 2019 IEEE.

关键词： Big data

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Unifying femtosecond and picosecond single-pulse magnetic switching in Gd-Fe-Co

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Physical Review B 2021年第10期103卷 104422-104422页

作者： F. Jakobs T. A. Ostler C.-H. Lambert Y. Yang S. Salahuddin R. B. Wilson J. Gorchon J. Bokor U. Atxitia Dahlem Center for Complex Quantum Systems and Fachbereich Physik Freie Universität Berlin 14195 Berlin Germany Département de Physique Universitè de Liége (B5) B-4000 Liége Belgium College of Business Technology and Engineering Sheffield Hallam University Howard Street Sheffield S1 1WB United Kingdom Department of Electrical Engineering and Computer Sciences University of California Berkeley California 94720 USA Department of Materials Science and Engineering University of California Berkeley California 94720 USA Lawrence Berkeley National Laboratory 1 Cyclotron Road Berkeley California 94720 USA Department of Mechanical Engineering and Materials Science and Engineering Program University of California Riverside California 92521 USA

Many questions are still open regarding the physical mechanisms behind the magnetic switching in Gd-Fe-Co alloys by single optical pulses. Phenomenological models suggest a femtosecond scale exchange relaxation between sublattice magnetization as the driving mechanism for switching. The recent observation of thermally induced switching in Gd-Fe-Co by using both several picosecond optical laser pulse as well as electric current pulses has questioned this previous understanding. This has raised the question of whether or not the same switching mechanics are acting at the femtosecond and picosecond scales. In this work, we aim at filling this gap in the understanding of the switching mechanisms behind thermal single-pulse switching. To that end, we have studied experimentally thermal single-pulse switching in Gd-Fe-Co alloys, for a wide range of system parameters, such as composition, laser power, and pulse duration. We provide a quantitative description of the switching dynamics using atomistic spin dynamics methods with excellent agreement between the model and our experiments across a wide range of parameters and timescales, ranging from femtoseconds to picoseconds. Furthermore, we find distinct element-specific damping parameters as a key ingredient for switching with long picosecond pulses and argue that switching with pulse durations as long as 15 ps is possible due to a low damping constant of Gd. Our findings can be easily extended to speed up dynamics in other contexts where ferrimagnetic Gd-Fe-Co alloys have been already demonstrated to show fast and energy-efficient processes, e.g., domain-wall motion in a track and spin-orbit torque switching in spintronics devices.

关键词： Demagnetization Magnetic interactions Magnetic order Magnetism Spin dynamics Ultrafast magnetic effects

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Technical debt and agile software development practices and processes: An industry practitioner survey

arXiv

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arXiv 2021年

作者： Holvitie, Johannes Licorish, Sherlock A. Spínola, Rodrigo O. Hyrynsalmi, Sami MacDonell, Stephen G. Mendes, Thiago S. Buchan, Jim Leppänen, Ville Turku Centre for Computer Science Software Development Laboratory Turku Finland University of Turku Department of Information Technology Turku Finland University of Otago Department of Information Science Otago Dunedin New Zealand Salvador University Graduate Program in Systems and Computer Bahia Salvador Brazil Federal University of Bahia Fraunhofer Project Center for Software and System Engineering Salvador Brazil Tampere University of Technology Pori Campus Pori Finland Federal Institute of Bahia Information Technology Department Bahia Santo Amaro Brazil Auckland University of Technology School of Engineering Computer and Mathematical Sciences Auckland New Zealand

Context: Contemporary software development is typically conducted in dynamic, resource-scarce environments that are prone to the accumulation of technical debt. While this general phenomenon is acknowledged, what remains unknown is how technical debt specifically manifests in and affects software processes, and how the software development techniques employed accommodate or mitigate the presence of this debt. Objectives: We sought to draw on practitioner insights and experiences in order to classify the effects of agile method use on technical debt management, given the popularity and perceived success of agile methods. We explore the breadth of practitioners' knowledge about technical debt;how technical debt is manifested across the software process;and the perceived effects of common agile software development practices and processes on technical debt. In doing so, we address a research gap in technical debt knowledge and provide novel and actionable managerial recommendations. Method: We designed, tested and executed a multi-national survey questionnaire to address our objectives, receiving 184 responses from practitioners in Brazil, Finland, and New Zealand. Results: Our findings indicate that: 1) Practitioners are aware of technical debt, although, there was under utilization of the concept, 2) Technical debt commonly resides in legacy systems, however, concrete instances of technical debt are hard to conceptualize which makes it problematic to manage, 3) Queried agile practices and processes help to reduce technical debt;in particular, techniques that verify and maintain the structure and clarity of implemented artifacts (e.g., Coding standards and Refactoring) positively affect technical debt management. Conclusions: The fact that technical debt instances tend to have characteristics in common means that a systematic approach to its management is feasible. However, notwithstanding the positive effects of some agile practices on technical debt management, comp

关键词： Legacy systems

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Mine-to-client planning with Markov Decision Process

Mine-to-client planning with Markov Decision Process

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European Control Conference (ECC)

作者： João Marcelo Leal Gomes Leite Edilson F. Arruda Laura Bahiense Lino G. Marujo Industrial Engineering Program Alberto Luiz Coimbra Institute – Graduate School and Research in Engineering Federal University of Rio de Janeiro Rio de Janeiro Brazil Systems Engineer and Computer Science Program Alberto Luiz Coimbra Institute – Graduate School and Research in Engineering Federal University of Rio de Janeiro Rio de Janeiro Brazil

ISBN: (数字)9783907144022

ISBN: (纸本)9781728188133

This works presents an innovative application of Markov Decision Process (MDP) to a medium-term mining logistics planning problem considering the mine-to-client supply chain. We implemented three distinct algorithms based on state-of-the-art approaches to solve large-scale problems, and compared their results. Furthermore, we combined all three variants in a single novel algorithm that attained fast convergence and may be an alternative to circumvent the curse of dimensionality underlying large scale problems.

关键词： Supply chains Planning Uncertainty Markov processes Computational modeling

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Finding shortest and nearly shortest path nodes in large substantially incomplete networks

arXiv

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arXiv 2022年

作者： Kitsak, Maksim Ganin, Alexander Elmokashfi, Ahmed Cui, Hongzhu Eisenberg, Daniel A. Alderson, David L. Korkin, Dmitry Linkov, Igor Faculty of Electrical Engineering Mathematics and Computer Science Delft University of Technology Delft Netherlands Network Science Institute Northeastern University BostonMA02115 United States Department of Systems and Information Engineering University of Virginia CharlottesvilleVA22904 United States U.S. Army Engineer Research and Development Center Contractor Concord MA01742 United States Simula Metropolitan Center for Digital Engineering Oslo Norway Bioinformatics and Computational Biology Program Worcester Polytechnic Institute WorcesterMA01609 United States Institute for Genomic Medicine Columbia University Medical Center New YorkNY United States Operations Research Department Naval Postgraduate School MontereyCA93943 United States Data Science Program Worcester Polytechnic Institute WorcesterMA01609 United States Computer Science Department Worcester Polytechnic Institute WorcesterMA01609 United States U.S. Army Engineer Research and Development Center Environmental Laboratory Concord MA01742 United States

Dynamic processes on networks, be it information transfer in the Internet, contagious spreading in a social network, or neural signaling, take place along shortest or nearly shortest paths. Unfortunately, our maps of most large networks are substantially incomplete due to either the highly dynamic nature of networks, or high cost of network measurements, or both, rendering traditional path finding methods inefficient. We find that shortest paths in large real networks, such as the network of protein-protein interactions (PPI) and the Internet at the autonomous system (AS) level, are not random but are organized according to latent-geometric rules. If nodes of these networks are mapped to points in latent hyperbolic spaces, shortest paths in them align along geodesic curves connecting endpoint nodes. We find that this alignment is sufficiently strong to allow for the identification of shortest path nodes even in the case of substantially incomplete networks. We demonstrate the utility of latent-geometric path finding in problems of cellular pathway reconstruction and communication security. Copyright © 2022, The Authors. All rights reserved.

关键词： Proteins

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Enriching and Characterizing T-Cell Repertoires from 3' Barcoded Single-Cell Whole Transcriptome Amplification Products

arXiv

引用

arXiv 2022年

作者： Jivanjee, Tasneem Ibrahim, Samira Nyquist, Sarah K. James Gatter, G. Bromley, Joshua D. Jaiswal, Swati Berger, Bonnie Behar, Samuel M. Christopher Love, J. Shalek, Alex K. Institute for Medical Engineering & Science Department of Chemistry Massachusetts Institute of Technology CambridgeMA United States Koch Institute for Integrative Cancer Research Massachusetts Institute of Technology CambridgeMA United States Ragon Institute of MGH MIT and Harvard CambridgeMA United States Broad Institute of MIT and Harvard CambridgeMA United States Massachusetts Institute of Technology CambridgeMA United States Program in Computational and Systems Biology Massachusetts Institute of Technology CambridgeMA United States Computer Science and Artificial Intelligence Laboratory Massachusetts Institute of Technology CambridgeMA United States Microbiology Graduate Program Massachusetts Institute of Technology CambridgeMA02139 United States Department of Microbiology and Physiological Systems University of Massachusetts Medical School WorcesterMA United States Department of Mathematics Massachusetts Institute of Technology CambridgeMA United States Department of Chemical Engineering Massachusetts Institute of Technology CambridgeMA United States

Antigen-specific T cells play an essential role in immunoregulation and many diseases such as cancer. Characterizing the T cell receptor (TCR) sequences that encode T cell specificity is critical for elucidating the antigenic determinants of immunological diseases and designing therapeutic remedies. However, methods of obtaining single-cell TCR sequencing data are labor and cost intensive, typically requiring both cell sorting and full length single-cell RNA-sequencing (scRNA-seq). New high-throughput 3' cell-barcoding scRNA-seq methods can simplify and scale this process;however, they do not routinely capture TCR sequences during library preparation and sequencing. While 5' cell-barcoding scRNA-seq methods can be used to examine TCR repertoire at single-cell resolution, doing so requires specialized reagents which cannot be applied to samples previously processed using 3' cell-barcoding methods. Here, we outline a method for sequencing TCRα and TCRβ transcripts from samples already processed using 3' cell-barcoding scRNA-seq platforms, ensuring TCR recovery at a single-cell resolution. In short, a fraction of the 3' barcoded whole transcriptome amplification (WTA) product typically used to generate a massively parallel 3' scRNA-seq library is enriched for TCR transcripts using biotinylated probes, and further amplified using the same universal primer sequence from WTA. Primer extension using TCR V-region primers and targeted PCR amplification using a second universal primer results in a 3' barcoded single-cell CDR3-enriched library that can be sequenced with custom sequencing primers. Coupled with 3' scRNA-seq of the same WTA, this method enables simultaneous analysis of single-cell transcriptomes and TCR sequences which can help interpret inherent heterogeneity among antigen-specific T cells and salient disease biology. The method presented here can also be adapted readily to enrich and sequence other transcripts of interest from both 3' and 5' barcoded scRNA-seq

关键词： RNA

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Sers Spectroscopy with Machine Learning to Analyze Human Plasma Derived Sevs for Coronary Artery Disease Diagnosis and Prognosis

SSRN

引用

SSRN 2022年

作者： Huang, Xi Liu, Bo Guo, Shenghan Guo, Weihong Liao, Ke Hu, Guoku Shi, Wen Kuss, Mitchell Duryee, Michael J. Anderson, Daniel R. Lu, Yongfeng Duan, Bin Department of Electrical and Computer Engineering University of Nebraska Lincoln LincolnNE United States Mary & Dick Holland Regenerative Medicine Program University of Nebraska Medical Center OmahaNE United States Division of Cardiovascular Medicine Department of Internal Medicine University of Nebraska Medical Center OmahaNE United States Department of Industrial and Systems Engineering Rutgers The State University of New Jersey PiscatawayNJ United States Department of Pharmacology and Experimental Neuroscience University of Nebraska Medical Center OmahaNE United States Division of Rheumatology Department of Internal Medicine University of Nebraska Medical Center OmahaNE United States Department of Surgery College of Medicine University of Nebraska Medical Center OmahaNE United States Department of Mechanical and Materials Engineering University of Nebraska-Lincoln LincolnNE United States School of Manufacturing Systems and Networks Arizona State University MesaAZ United States

Coronary artery disease (CAD) is one of the major cardiovascular diseases and represents the leading causes of global mortality. Developing new diagnostic and therapeutic approaches for CAD treatment are critically needed, especially for an early accurate CAD detection and further timely intervention. In this study, we successfully isolated human plasma small extracellular vesicles (sEVs) from four stages of CAD patients, i.e., healthy control, stable plaque, non-ST-elevation myocardial infarction, and ST-elevation myocardial infarction. Surface-enhanced Raman scattering (SERS) measurement in conjunction with five machine learning approaches, including Quadratic Discriminant Analysis, Support Vector Machine (SVM), K-Nearest Neighbor, Artificial Neural network, were then applied for the classification and prediction of the sEV samples. Among these five approaches, the overall accuracy of SVM shows the best predication results on both early CAD detection (86.4%) and overall prediction (92.3%). SVM also possesses the highest sensitivity (97.69%) and specificity (95.7%). Thus, our study demonstrates a promising strategy for noninvasive, safe, and high accurate diagnosis for CAD early detection. © 2022, The Authors. All rights reserved.

关键词： Diseases

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Use of the Web API as a basis for obtaining the latest data on bitcoin prices at 30 exchange places

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IOP Conference Series: Materials Science and engineering 2021年第1期1125卷

作者： Rizky Parlika Arista Pratama Informatics Engineering Study Program Faculty of Computer Science National Development University 'Veteran' East Java Information Systems Study Program Faculty of Computer Science Raya Rungkut Madya Road Gunung Anyar Surabaya

Bitcoin has become a commodity traded by millions of traders from all over the world. This is one of the causes of fluctuating price movements. From the data we got on coinmarketcap, Bitcoin is traded on various cryptocurrency trading exchanges. And at every exchange that has a reputation, of course, has an API service to access historical data about the price movements of all the crypto commodities they have traded from the start. By using the PHP programming language and implementation of the CURL function for JSON readings, we can pull Bitcoin movement data in real time. In this paper, Bitcoin is specifically observed because it is the forerunner and the main cryptocurrency commodity traded and is a determinant of Alternative coin price movements in general. In this paper Bitcoin price monitoring is carried out at 30 reputable exchange places through API access provided by each exchange place. Furthermore, conclusions are drawn about the various variants of how to access the API from the 30 bitcoin exchange places. The program code that is displayed directly in this paper can then be used as an initial reference if you want to develop a Cryptocurrency price movement monitoring application for Bitcoin. At the end of the paper, an example of the application of Bitcoin price monitoring will be presented using a web-based application containing charts and supporting indicators as well as a telegram bot to display price depth charts.

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Accurately predicting anticancer peptide using an ensemble of heterogeneously trained classifiers

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Informatics in Medicine Unlocked 2023年 42卷

作者： Azim, Sayed Mehedi Sabab, Noor Hossain Nuri Noshadi, Iman Alinejad-Rokny, Hamid Sharma, Alok Shatabda, Swakkhar Dehzangi, Iman Center for Computational and Integrative Biology Rutgers University Camden 08102 NJ United States Department of Computer Science and Engineering United International University Plot 2 United City Madani Avenue BaddaDhaka 1212 Bangladesh Department of Bioengineering University of California Riverside 92507 CA United States BioMedical Machine Learning Lab The Graduate School of Biomedical Engineering The University of New South Wales (UNSW Sydney) Sydney NSW 2052 Australia UNSW Data Science Hub UNSW Sydney Sydney NSW 2052 Australia Health Data Analytics Program AI-enabled Processes Research Centre Macquarie University Sydney 2109 Australia Institute for Integrated and Intelligent Systems Griffith University Brisbane Australia Laboratory for Medical Science Mathematics RIKEN Center for Integrative Medical Sciences Yokohama 230-0045 Japan Department of Computer Science Rutgers University Camden 08102 NJ United States

The use of therapeutic peptides for the treatment of cancer has received tremendous attention in recent years. Anticancer peptides (ACPs) are considered new anticancer drugs which have several advantages over chemistry-based drugs including high specificity, strong tumor penetration capacity, and low toxicity level for normal cells. Due to the rise of experimentally verified bioactive peptides, several in silico approaches became imperative for the investigation of the characteristics of ACPs. In this paper, we proposed a new machine learning tool named iACP-RF that uses a combination of several sequence-based features and an ensemble of three heterogeneously trained Random Forest classifiers to accurately predict anticancer peptides. Experimental results show that our proposed model achieves an accuracy of 75.9% which outperforms other state-of-the-art methods by a significant margin. We also achieve 0.52, 75.6%, and 76.2% in terms of Matthews Correlation Coefficient (MCC), Sensitivity, and Specificity, respectively. iACP-RF as a standalone tool and its source code are publicly available at: https://***/MLBC-lab/iACP-RF. © 2023 The Authors

关键词： Anticancer peptides Ensemble learning Feature extraction Heterogeneous classifiers Machine learning Random Forest

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Haptic display for virtual reality: progress and challenges

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Virtual Reality & Intelligent Hardware 2019年第2期1卷 136-162页

作者： Dangxiao WANG Yuan GUO Shiyi LIU Yuru ZHANG Weiliang XU Jing XIAO State Key Laboratory of Virtual Reality Technology and Systems Beihang UniversityBeijing 100083China Beijing Advanced Innovation Center for Biomedical Engineering Beihang UniversityBeijing 100083China Peng Cheng Laboratory Shenzhen 518055China Department of Mechanical Engineering University of AucklandAuckland 1142New Zealand School of Computer Science and the Robotics Engineering Program Worcester Polytechnic InstituteWorcesterMA 01609-2280USA

Immersion, interaction, and imagination are three features of virtual reality (VR). Existing VR systems possess fairly realistic visual and auditory feedbacks, and however, are poor with haptic feedback, by means of which human can perceive the physical world via abundant haptic properties. Haptic display is an interface aiming to enable bilateral signal communications between human and computer, and thus to greatly enhance the immersion and interaction of VR systems. This paper surveys the paradigm shift of haptic display occurred in the past 30 years, which is classified into three stages, including desktop haptics, surface haptics, and wearable haptics. The driving forces, key technologies and typical applications in each stage are critically reviewed. Toward the future high-fidelity VR interaction, research challenges are highlighted concerning handheld haptic device, multimodal haptic device, and high fidelity haptic rendering. In the end, the importance of understanding human haptic perception for designing effective haptic devices is addressed.

关键词： Haptic display Virtual reality Desktop haptics Surface haptics Wearable haptics Multimodal haptics

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