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IEEE International Symposium on Biomedical Imaging

作者： Emese Sükei Marzieh Oghbaie Ursula Schmidt-Erfurth Günter Klambauer Hrvoje Bogunović Department of Ophthalmology OPTIMA Lab Medical University of Vienna Austria Institute of Artificial Intelligence Medical University of Vienna Center for Medical Data Science Austria LIT AI Lab Institute for Machine Learning Johannes Kepler University Austria NXAI GmbH Linz Austria

ISBN: (数字)9798331520526

ISBN: (纸本)9798331520533

This paper presents a method for retinal disease classification using optical coherence tomography (OCT) scans, specifically addressing the challenge of variable B-scan density across dataset volumes. Deep learning methods often struggle with fluctuations in the number of B-scans within OCT volumes, which can limit their effectiveness. To address this, we propose an extended long short-term memory (xLSTM) model capable of processing variable-length B-scan sequences, capturing spatial and contextual information across entire volumes regardless of slice count. Leveraging xLSTM's advanced memory structure, our method enhances classification accuracy while maintaining computational efficiency. We evaluated the xLSTM-based approach on public and private datasets, demonstrating its robustness against inter-study variability and domain shifts. Experimental results show that this approach performs on par with or surpasses state-of-the-art baselines and offers a scalable solution for accurate 3D volume classification.

关键词： Three-dimensional displays Accuracy Optical coherence tomography Pipelines Memory management Retina Robustness Long short term memory Diseases Biomedical imaging

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Empowering LLMs with Logical Reasoning: A Comprehensive Survey

arXiv

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arXiv 2025年

作者： Cheng, Fengxiang Li, Haoxuan Liu, Fenrong van Rooij, Robert Zhang, Kun Lin, Zhouchen Institute for Logic Language and Computation University of Amsterdam Netherlands Center for Data Science Peking University China Machine Learning Department MBZUAI Department of Philosophy Tsinghua University China Department of Philosophy CMU United States Institute for Artificial Intelligence Peking University China Peng Cheng Laboratory China National Key Lab of General AI School of Intelligence Science and Technology Peking University China

Large language models (LLMs) have achieved remarkable successes on various natural language tasks. However, recent studies have found that there are still significant challenges to the logical reasoning abilities of LLMs. This paper summarizes and categorizes the main challenges into two aspects: (1) Logical question answering, LLMs often fail to generate the correct answer within complex logical problem which requires sophisticated deductive, inductive or abductive reasoning given a collection of premises and constrains. (2) Logical consistency, LLMs are prone to producing responses contradicting themselves across different questions. For example, a state-of-the-art Macaw question-answering LLM answers Yes to both questions Is a magpie a bird? and Does a bird have wings? but answers No to Does a magpie have wings?. To facilitate this research direction, we comprehensively investigate the most cutting-edge methods and propose detailed taxonomies of these methods. Specifically, to accurately answer complex logic questions, previous methods can be categorized based on reliance on external solvers, prompts, pretraining, and fine-tuning. To avoid logical contradictions, we discuss concepts and solutions of various logical consistencies, including implication, negation, transitivity, factuality consistency, and their composites. In addition, we review commonly used benchmark datasets and evaluation metrics, and discuss promising research directions, such as extensions to modal logic to account for uncertainty, and efficient algorithms satisfying multiple logical consistencies simultaneously. © 2025, CC BY.

关键词： Birds

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Cross-Domain Animal Pose Estimation with Skeleton Anomaly-Aware Learning

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IEEE Transactions on Circuits and Systems for Video Technology 2025年

作者： Han, Le Chen, Kaixuan Zhao, Lei Jiang, Yangbo Wang, Pengfei Zheng, Nenggan Zhejiang Hangzhou310007 China Zhejiang University College of Computer Science and Technology Zhejiang Hangzhou310007 China Zhejiang University State Key Laboratory of Blockchain and Data Security Zhejiang Hangzhou310007 China Institute of Blockchain and Data Security. China Zhejiang University School of Software Technology Ningbo China Zhejiang University State Key Lab of Brain-Machine Intelligence Hangzhou310007 China Zhejiang Provincial Government ZJU Collaborative Innovation Center for Artificial Intelligence by MOE Hangzhou310007 China Bengbu University School of Computer and Information Engineering Bengbu233030 China

Animal pose estimation is often constrained by the scarcity of annotations and the diversity of scenarios and species. The pseudo-label generation based unsupervised domain adaptation paradigm, which discriminates the predicted keypoints of unlabeled data based on the skeleton position consistency, has demonstrated effectiveness for such problems. However, existing methods generate pseudo-labels with massive false positives, because they cannot effectively distinguish sample pairs with the same errors. In this study, we propose a cross-domain animal pose estimation model from a novel perspective of skeleton anomaly learning. We construct a graph contrastive learning mechanism to acquire the skeleton anomaly-aware knowledge, which enables the generation of accurate pseudo-labels for target domain and imposes graph constraint on unlabeled data. And a skeleton anomaly-feedback based domain adaptation framework is designed to facilitate implicit alignment of object-specific features and joint training of cross-domain. Besides, we propose a novel rat pose dataset named UDARP-9.4K to address the gap of small-sized animal pose datasets encompassing diverse experimental scenarios. The related datasets are reviewed and evaluated in detail. Extensive experiments are conducted on UDARP-9.4K and two public datasets to demonstrate the superiority of the proposed model in cross-scenarios and cross-species animal pose estimation tasks. Further analysis reveals the effectiveness of the proposed model for skeleton structure feature learning. The UDARP-9.4K dataset is available here. © 1991-2012 IEEE.

关键词： Invertebrates

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ZeroED: Hybrid Zero-shot Error Detection through Large Language Model Reasoning

arXiv

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arXiv 2025年

作者： Ni, Wei Zhang, Kaihang Miao, Xiaoye Zhao, Xiangyu Wu, Yangyang Wang, Yaoshu Yin, Jianwei Center for Data Science Zhejiang University Hangzhou China The State Key Lab of Brain-Machine Intelligence Zhejiang University Hangzhou China Department of Data Science City University of Hong Kong Hong Kong Software College Zhejiang University Ningbo China Shenzhen Institute of Computing Sciences Shenzhen China College of Computer Science Zhejiang University Hangzhou China

Error detection (ED) in tabular data is crucial yet challenging due to diverse error types and the need for contextual understanding. Traditional ED methods often rely heavily on manual criteria and labels, making them labor-intensive. Large language models (LLM) can minimize human effort but struggle with errors requiring a comprehensive understanding of data context. In this paper, we propose ZeroED, a novel hybrid error detection framework, which combines LLM reasoning ability with the machine learning pipeline via zero-shot prompting. ZeroED operates in four steps, i.e., feature representation, error labeling, training data construction, and detector training. Initially, to enhance error distinction, ZeroED generates rich data representations using LLM-driven error reason-aware binary features, pre-trained embeddings, and statistical features. Then, ZeroED employs LLM to holistically label errors through in-context learning, guided by a two-step LLM reasoning process for detailed ED guidelines. To reduce token costs, LLMs are applied only to representative data selected via clustering-based sampling. High-quality training data is constructed through in-cluster label propagation and LLM augmentation with verification. Finally, a classifier is trained to detect all errors. Extensive experiments on seven datasets demonstrate that, ZeroED outperforms state-of-the-art methods by a maximum 30% improvement in F1 score and up to 90% token cost reduction. Copyright © 2025, The Authors. All rights reserved.

关键词： Zero-shot learning

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Efficient image representation for object recognition via pivots selection

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Frontiers of Computer science 2015年第3期9卷 383-391页

作者： Bojun XIE Yi LIU HuiZHANG Jian YU Beijing Key Lab of Traffic Data Analysis and Mining School of Computer and Information Technology Beijing Jiaotong University Beijing 100044 China Key Lab of Machine Learning and Computational Intelligence College of Mathematics and Computer Science Hebei University Baoding 071000 China

Patch-level features are essential for achieving good performance in computer vision tasks. Besides well- known pre-defined patch-level descriptors such as scalein- variant feature transform （SIFT） and histogram of oriented gradient （HOG）, the kernel descriptor （KD） method [1] of- fers a new way to ＂grow-up＂ features from a match-kernel defined over image patch pairs using kernel principal compo- nent analysis （KPCA） and yields impressive results. In this paper, we present efficient kernel descriptor （EKD） and efficient hierarchical kernel descriptor （EHKD）, which are built upon incomplete Cholesky decomposition. EKD au- tomatically selects a small number of pivot features for gener- ating patch-level features to achieve better computational effi- ciency. EHKD recursively applies EKD to form image-level features layer-by-layer. Perhaps due to parsimony, we find surprisingly that the EKD and EHKD approaches achieved competitive results on several public datasets compared with other state-of-the-art methods, at an improved efficiency over KD.

关键词： efficient kernel descriptor efficient hierarchi-cal kernel descriptor incomplete Cholesky decomposition,patch-level features image-level features

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LSTM based Soft-Sensor for Estimating Nitrate Concentration in Aquaponics pond 3

LSTM based Soft-Sensor for Estimating Nitrate Concentration ...

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3rd International Conference for Innovation in Technology, INOCON 2024

作者： Dharshan, A. Kumar, Purushottam Ravimaran, S. Srinivasulu Reddy, U. Saranathan College of Engineering Department of Artificial Intelligence and Data Science Trichy India National Institute of Technology Artificial Intelligence Machine Learning & Data Analytics Lab Trichy India National Institute of Technology Department of Computer Applications Machine Learning & Data Analytics Lab Trichy India

ISBN: (纸本)9798350381931

In the field of aquaponics, where fish and plants coexist in a symbiotic environment, closely monitoring nitrate levels in the water is crucial due to their profound impact on aquatic and plant well-being. Traditional nitrate measurement methods are often time-consuming and costly. Various approaches, including first principles, IoT-based sensors, and machine learning-based soft sensors, have been attempted to address this challenge. However, these efforts face challenges such as expensive sensors, infrequent data collection, multistage data processing using limited sensor types, and the need for regular maintenance like cleaning and calibration. Additionally, varied environmental conditions affect sensor suitability for different water environments, and even some machine learning-based soft sensors have proven inaccurate. In response, soft sensors, especially deep learning-based ones, have gained prominence in industrial applications for their adaptability and accuracy. These sensors provide real-time insights into complex processes without requiring expensive hardware. In this study, an innovative solution was introduced using Long Short-Term Memory (LSTM) technology, a neural network architecture in deep learning known for capturing complex temporal patterns. LSTM is well-suited for modeling and predicting nitrate concentration changes in aquaponics, trained with extensive data collected from various aquaponic ponds. Through rigorous evaluation, a remarkable MSE value of 0.00074 and an impressive R-squared score of 0.98 were achieved, holding potential for scaling up to commercial applications, benefiting aquaponics operations, supporting researchers, and enhancing sustainability and productivity in aquaponic systems. © 2024 IEEE.

关键词： Nitrates

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Deep Learning Meets Teleconnections: Improving S2S Predictions for European Winter Weather

arXiv

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arXiv 2025年

作者： Bommer, Philine L. Kretschmer, Marlene Spuler, Fiona R. Bykov, Kirill Höhne, Marina M.-C. Understandable Machine Intelligence Lab TU Berlin Berlin Germany Department of Data Science ATB Potsdam Germany Leipzig Institute for Meteorology Leipzig University Leipzig Germany Department of Meteorology University of Reading Reading United Kingdom The Alan Turing Institute London United Kingdom Institute of Computer Science University of Potsdam Potsdam Germany BIFOLD Berlin Institute for the Foundations of Learning and Data Berlin Germany

Predictions on subseasonal-to-seasonal (S2S) timescales—ranging from two weeks to two months—are crucial for early warning systems but remain challenging owing to chaos in the climate system. Teleconnections, such as the stratospheric polar vortex (SPV) and Madden-Julian Oscillation (MJO), offer windows of enhanced predictability, however, their complex interactions remain underutilized in operational forecasting. Here, we developed and evaluated deep learning architectures to predict North Atlantic-European (NAE) weather regimes, systematically assessing the role of remote drivers in improving S2S forecast skill of deep learning models. We implemented (1) a Long Short-term Memory (LSTM) network predicting the NAE regimes of the next six weeks based on previous regimes, (2) an Index-LSTM incorporating SPV and MJO indices, and (3) a ViT-LSTM using a Vision Transformer to directly encode stratospheric wind and tropical outgoing longwave radiation fields. These models are compared with operational hindcasts as well as other AI models. Our results show that leveraging teleconnection information enhances skill at longer lead times. Notably, the ViT-LSTM outperforms ECMWF’s subseasonal hindcasts beyond week 4 by improving Scandinavian Blocking (SB) and Atlantic Ridge (AR) predictions. Analysis of high-confidence predictions reveals that NAO−, SB, and AR opportunity forecasts can be associated with SPV variability and MJO phase patterns aligning with established pathways, also indicating new patterns. Overall, our work demonstrates that encoding physically meaningful climate fields can enhance S2S prediction skill, advancing AI-driven subseasonal forecast. Moreover, the experiments highlight the potential of deep learning methods as investigative tools, providing new insights into atmospheric dynamics and predictability. © 2025, CC BY.

关键词： Deep learning

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Finding the transcription factor binding locations using novel algorithm segmentation to filtration (S2F)

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Journal of Ambient intelligence and Humanized Computing 2024年第9期15卷 3347-3358页

作者： Theepalakshmi, P. Srinivasulu Reddy, U. Department of Computer Science and Engineering Gandhi Institute of Technology and Management Karnataka Bengaluru India Machine Learning and Data Analytics Lab Center of Excellence in Artificial Intelligence Department of Computer Applications National Institute of Technology Tamilnadu Tiruchirappalli India

The primary aim of identifying the binding motifs in gene regulation is to understand the transcriptional regulation molecular mechanism systematically. In this study, the (, d) motif search issue was considered which entails finding the length motifs which differ by at most d substitutions. However, identifying the high-quality pattern (, d) is challenging. It is intended to address the above problem with motif discovery and handle it using the proposed algorithm S2F (Segmentation to Filtration) based on the qPMS (quorum Planted Motif Search) algorithm model. From the entire DNA sequences, five percent are chosen at random to be used in the motif discovery process. This random sub segment (subseg) portion is split up into base, sub k-mers, and its sizes (motif length ()) are determined by the iterative approach. Corresponding to the sizes of and d (mutations), the k-mers are chosen which participated in filtration techniques and the base k-mer count and frequency are updated. The highest frequency of k-mer is recognized as the motif. The algorithm’s performance was evaluated using the two real datasets Escherichia coli cyclic AMP receptor protein (CRP) and mouse Embryonic Stem Cell (mESC) ChIP-seq (Chromatin Immuno Precipitation) dataset. Results from the experiments show that S2F can identify the motifs and appear faster compared to previous state-of-the-art PMS (Planted Motif Search) and qPMS algorithms. Graphical Abstract: (Figure presented.) © The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2024.

关键词： DNA sequences

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Can Language Models Serve as Temporal Knowledge Bases?

Can Language Models Serve as Temporal Knowledge Bases?

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2022 Findings of the Association for Computational Linguistics: EMNLP 2022

作者： Zhao, Ruilin Zhao, Feng Xu, Guandong Zhang, Sixiao Jin, Hai National Engineering Research Center for Big Data Technology and System Services Computing Technology and System Lab Cluster and Grid Computing Lab School of Computer Science and Technology Huazhong University of Science and Technology China Data Science and Machine Intelligence Lab University of Technology Sydney Sydney Australia

Recent progress regarding the use of language models (LMs) as knowledge bases (KBs) has shown that language models can act as structured knowledge bases for storing relational facts. However, most existing works only considered the LM-as-KB paradigm in a static setting, which ignores the analysis of temporal dynamics of world knowledge. Furthermore, a basic function of KBs, i.e., the ability to store conflicting information (i.e., 1-N, N-1 and N-M relations), is underexplored. In this paper, we formulate two practical requirements for treating LMs as temporal KBs: (i) the capacity to store temporally-scoped knowledge that contains conflicting information and (ii) the ability to use stored knowledge for temporally-scoped knowledge queries. We introduce a new dataset called LAMA-TK which is aimed at probing temporally-scoped knowledge, and investigate the two above requirements to explore the LM-as-KB paradigm in the temporal domain. On the one hand, experiments show that LMs can memorize millions of temporally-scoped facts with relatively high accuracy and transfer stored knowledge to temporal knowledge queries, thereby expanding the LM-as-KB paradigm to the temporal domain. On the other hand, we show that memorizing conflicting information, which has been neglected by previous works, is still challenging for LMs and hinders the memorization of other unrelated one-to-one relationships. © 2022 Association for Computational Linguistics.

关键词： Computational linguistics

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RETIA: Relation-Entity Twin-Interact Aggregation for Temporal Knowledge Graph Extrapolation 39

RETIA: Relation-Entity Twin-Interact Aggregation for Tempora...

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39th IEEE International Conference on data Engineering, ICDE 2023

作者： Liu, Kangzheng Zhao, Feng Xu, Guandong Wang, Xianzhi Jin, Hai Huazhong University of Science and Technology National Engineering Research Center for Big Data Technology and System Services Computing Technology and System Lab Cluster and Grid Computing Lab School of Computer Science and Technology Wuhan China University of Technology Sydney Data Science and Machine Intelligence Lab Sydney Australia

ISBN: (纸本)9798350322279

Temporal knowledge graph (TKG) extrapolation aims to predict future unknown events (facts) based on historical information, and has attracted considerable attention due to its great practical significance. Accurate representations (embeddings) of entities and relations form the basis of TKG extrapolation. Recent work has been devoted to improving the rationality of entity representations. However, on the one hand, ignoring relation modeling results in incomplete relation representations;therefore, some approaches aggregate only immediately adjacent entities of relations, but this can lead to the "message islands"problem of relation modeling. On the other hand, ignoring the association constraints between relations and entities can make the embeddings of both relations and entities prone to overfitting. To address the abovementioned challenges, we propose an advanced method, namely, RETIA. For the former issue, we generate twin hyperrelation subgraphs for each historical subgraph and then aggregate both the adjacent entities and relations in the hyperrelation subgraphs through a graph convolutional network (GCN). About the latter concern, we propose a twin-interact module (TIM), which provides communication channels for relation aggregation and entity aggregation during the evolution of the historical sequence. Experiments conducted on five public datasets show that RETIA has made great improvements across several evaluation metrics. Our released code is available at https://***/CGCL-codes/RETIA. © 2023 IEEE.

关键词： Extrapolation

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