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Expert consensus on the diagnosis and treatment of solid tumors with BRAF mutations

The Innovation 2024年第6期5卷 100-116页

作者： Wenxian Wang Bin Lian Chunwei Xu Qian Wang Ziming Li Nan Zheng Aijun Liu Jinpu Yu Wenzhao Zhong Zhijie Wang Yongchang Zhang Jingjing Liu Shirong Zhang Xiuyu Cai Anwen Liu Wen Li Lili Mao Ping Zhan Hongbing Liu Tangfeng Lv Liyun Miao Lingfeng Min Yu Chen Jingping Yuan Feng Wang Zhansheng Jiang Gen Lin Long Huang Xingxiang Pu Rongbo Lin Weifeng Liu Chuangzhou Rao Dongqing Lv Zongyang Yu Xiaoyan Li Chuanhao Tang Chengzhi Zhou Junping Zhang Junli Xue Hui Guo Qian Chu Rui Meng Xuewen Liu Jingxun Wu Rui Zhang Jin Zhou Zhengfei Zhu Yongheng Li Hong Qiu Fan Xia Yuanyuan Lu Xiaofeng Chen Jian Feng Rui Ge Enyong Dai Yu Han Weiwei Pan Fei Pang Xin Huang Meizhen Hu Qing Hao Kai Wang Fan Wu Binbin Song Bingwei Xu Liping Wang Youcai Zhu Li Lin Yanru Xie Xinqing Lin Jing Cai Ling Xu Jisheng Li Xiaodong Jiao Kainan Li Jia Wei Huijing Feng Lin Wang Yingying Du Wang Yao Xuefei Shi Xiaomin Niu Dongmei Yuan Yanwen Yao Jianhui Huang Yue Feng Yinbin Zhang Pingli Sun Hong Wang Mingxiang Ye Dong Wang Zhaofeng Wang Yue Hao Zhen Wang Bin Wan Donglai Lv Shengjie Yang Jin Kang Jiatao Zhang Chao Zhang Wenfeng Li Jianfei Fu Lizhi Wu Shijie Lan Juanjuan Ou Lin Shi Zhanqiang Zhai Yina Wang Bihui Li Zhang Zhang Ke Wang Xuelei Ma Zhongwu Li Zhefeng Liu Nong Yang Lin Wu Huijuan Wang Gu Jin Guansong Wang Jiandong Wang Hubing Shi Meiyu Fang Yong Fang Yuan Li Xiaojia Wang Jing Chen Yiping Zhang Xixu Zhu Yi Shen Shenglin Ma Biyun Wang Yong Song Zhengbo Song Wenfeng Fang Yuanzhi Lu Lu Si Department of Chemotherapy Chinese Academy of Sciences University Cancer Hospital(Zhejiang Cancer Hospital)HangzhouZhejiang 310022P.R.China Key Laboratory of Carcinogenesis and Translational Research(Ministry of Education/Beijing) Department of Melanoma and SarcomaPeking University Cancer Hospital&InstituteBeijing 100142P.R.China Institute of Cancer and Basic Medicine(ICBM) Chinese Academy of SciencesHangzhouZhejiang 310022P.R.China Department of Respiratory Medicine Affiliated Jinling HospitalMedical School of Nanjing UniversityNanjingJiangsu 210002P.R.China Department of Respiratory Medicine Affiliated Hospital of Nanjing University of Chinese MedicineJiangsu Province Hospital of Chinese MedicineNanjingJiangsu 210029P.R.China Department of Shanghai Lung Cancer Center Shanghai Chest HospitalShanghai Jiao Tong UniversityShanghai 200030P.R.China Beijing Key Laboratory of Mental Disorders National Clinical Research Center for Mental Disorders&National Center for Mental DisordersBeijing Anding HospitalCapital Medical UniversityBeijing 200030China Advanced Innovation Center for Human Brain Protection Capital Medical UniversityBeijing 200030China Senior Department of Pathology the 7th Medical Center of PLA General HospitalBeijing 100700P.R.China Department of Cancer Molecular Diagnostics Core Tianjin Medical University Cancer Institute and HospitalTianjin 300060P.R.China Guangdong Lung Cancer Institute Guangdong Provincial Laboratory of Translational Medicine in Lung CancerGuangdong Provincial People’s HospitalGuangdong Academy of Medical SciencesSchool of MedicineGuangzhouGuangdong 510080P.R.China State Key Laboratory of Molecular Oncology Department of Medical OncologyNational Cancer Center/National Clinical Research Center for Cancer/Cancer HospitalChinese Academy of Medical Sciences and Peking Union Medical CollegeBeijing 100021P.R.China Department of Medical Oncology Lung Cancer and Gastrointestinal UnitHunan Cancer Hospital/The Affiliated Cancer Hospital of Xiangya School

The BRAF gene is an important signaling molecule in human cells that is involved in the regulation of cell growth,differentiation,and *** the BRAF gene mutates,it can lead to abnormal activation of the signaling pathway,which promotes cell proliferation,inhibits cell apoptosis,and ultimately contributes to the occurrence and development of *** mutations are widely present in various cancers,including malignant melanoma,thyroid cancer,colorectal cancer,non-small cell lung cancer,and hairy cell leukemia,among *** is an important target for the treatment of various solid tumors,and targeted combination therapies,represented by BRAF inhibitors,have become one of the main treatment modalities for a variety of BRAF-mutation-positive solid tumors.

关键词： BRAF diagnosis treatment

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Target-specificity of different amyrin subunits in impeding HCV influx mechanism inside the human cells considering the quantum tunnel profiles and molecular strings of the CD81 receptor: a combined in silico and in vivo study

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In silico pharmacology 2023年第1期11卷 8页

作者： Anika Jabin Mohammad Fahim Uddin Salauddin Al Azad Ashfaque Rahman Fawzia Tabassum Pritthy Sarker A K M Helal Morshed Samiur Rahman Fatima Fairuz Raisa Musfiqur Rahman Sakib Abeer Hasan Olive Tabassum Islam Ramisha Tahsin Shahlaa Zernaz Ahmed Partha Biswas Mst Umme Habiba Mahbuba Siddiquy Maryam Jafary Department of Biochemistry and Microbiology North South University Dhaka 1229 Bangladesh. College of Material Science and Engineering Zhejiang Sci-Tech University Hangzhou 310018 Zhejiang People's Republic of China. Key Laboratory of Industrial Biotechnology Ministry of Education School of Biotechnology Jiangnan University Wuxi 214122 Jiangsu Province People's Republic of China. Department of Genetic Engineering and Biotechnology Shahjalal University of Science and Technology Sylhet 3114 Bangladesh. Pathology and Pathophysiology Major Academy of Medical Science Zhengzhou University Zhengzhou City 450001 Henan Province People's Republic of China. Department of Electrical and Electronic Engineering Brac University Dhaka 1212 Bangladesh. Department of Pharmacy Bangabandhu Sheikh Mujibur Rahman Science and Technology University Gopalganj 8100 Bangladesh. Department of Pharmacy East West University Dhaka 1212 Bangladesh. Department of Computer Science and Engineering East West University Dhaka 1212 Bangladesh. Department of Pharmaceutical Sciences North South University Dhaka 1229 Bangladesh. Department of Genetic Engineering and Biotechnology Jashore University of Science and Technology Jashore 7408 Bangladesh. Data Science Research Unit RPG Interface Lab Jashore 7400 Bangladesh. State Key Laboratory of Food Science and Technology Jiangnan University Wuxi 214122 Jiangsu Province People's Republic of China. Division of Food Safety and Hygiene Department of Environmental Health Engineering School of Public Health Tehran University of Medical Sciences Tehran *** Iran.

HCV is a hepatotropic RNA virus recognized for its frequent virulence and fatality worldwide. Despite many vaccine development programs underway, researchers are on a quest for natural bioactive compounds due to their multivalent efficiencies against viral infections, considering which the current research aimed to figure out the target-specificity and therapeutic potentiality of α, β, and δ subunits of amyrin, as novel bioactive components against the HCV influx mechanism. Initially, the novelty of amyrin subunits was conducted from 203 pharmacophores, comparing their in-silico pharmacokinetic and pharmacodynamic profiles. Besides, the best active site of CD81 was determined following the quantum tunneling algorithm. The molecular dynamic simulation was conducted (100 ns) following the molecular docking steps to reveal the parameters- RMSD (Å); Cα; RMSF (Å); MolSA (Å); Rg (nm); PSA (Å); SASA (Å), and the MM-GBSA dG binding scores. Besides, molecular strings of CD81, along with the co-expressed genes, were classified, as responsible for encoding CD81-mediated protein clusters during HCV infection, resulting in the potentiality of amyrins as targeted prophylactics in HCV infection. Finally, in vivo profiling of the oxidative stress marker, liver-specific enzymes, and antioxidant markers was conducted in the DMN-induced mice model, where -amyrin scored the most significant values in all aspects.

关键词： CD81 receptor Co-expressed genes behind HCV invasion DMN-induced hepatic fibrosis HCV infection In-silico pharmacokinetics and pharmacodynamics Target-specificity of amyrins

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Correction: Links between electroconvulsive therapy responsive and cognitive impairment multimodal brain networks in late-life major depressive disorder

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BMC medicine 2023年第1期21卷 113页

作者： Shile Qi Vince D Calhoun Daoqiang Zhang Jeremy Miller Zhi-De Deng Katherine L Narr Yvette Sheline Shawn M McClintock Rongtao Jiang Xiao Yang Joel Upston Tom Jones Jing Sui Christopher C Abbott College of Computer Science and Technology Nanjing University of Aeronautics and Astronautics Nanjing China. shile.qi@***. Tri-institutional Center for Translational Research in Neuroimaging and Data Science (TReNDS) Georgia State University Georgia Institute of Technology Emory University Atlanta GA USA. College of Computer Science and Technology Nanjing University of Aeronautics and Astronautics Nanjing China. Department of Psychiatry University of New Mexico Albuquerque NM USA. Noninvasive Neuromodulation Unit Experimental Therapeutics & Pathophysiology Branch National Institute of Mental Health Bethesda MD USA. Departments of Neurology Psychiatry and Biobehavioral Sciences University of California Los Angeles CA USA. Department of Psychiatry University of Pennsylvania Philadelphia PA USA. Division of Psychology Department of Psychiatry UT Southwestern Medical Center Dallas TX USA. State Key Laboratory of Cognitive Neuroscience and Learning Beijing Normal University Beijing China. Huaxi Brain Research Center West China Hospital of Sichuan University Chengdu China. State Key Laboratory of Cognitive Neuroscience and Learning Beijing Normal University Beijing China. jsui@***. Department of Psychiatry University of New Mexico Albuquerque NM USA. cabbott@salud.unm.edu.

The original article [1] mistakenly omitted panel (g) from Figure 1; the panel has since been re-inserted.

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Author Correction: Mapping global lake dynamics reveals the emerging roles of small lakes

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Nature communications 2022年第1期13卷 6337页

作者： Xuehui Pi Qiuqi Luo Lian Feng Yang Xu Jing Tang Xiuyu Liang Enze Ma Ran Cheng Rasmus Fensholt Martin Brandt Xiaobin Cai Luke Gibson Junguo Liu Chunmiao Zheng Weifeng Li Brett A Bryan School of Environmental Science and Engineering Southern University of Science and Technology Shenzhen China. Department of Urban Planning and Design The University of Hong Kong Hong Kong SAR China. Urban Systems Institute The University of Hong Kong Hong Kong SAR China. School of Environmental Science and Engineering Southern University of Science and Technology Shenzhen China. fengl@***. Department of Geosciences and Natural Resource Management University of Copenhagen Copenhagen Denmark. Department of Biology University of Copenhagen Copenhagen Denmark. Department of Physical Geography and Ecosystem Science Lund University Lund Sweden. Guangdong Provincial Key Laboratory of Brain-inspired Intelligent Computation Department of Computer Science and Engineering Southern University of Science and Technology Shenzhen China. Institute of Geodesy and Geophysics Chinese Academy of Sciences Wuhan China. School of Water Conservancy North China University of Water Resources and Electric Power 450046 Zhengzhou China. EIT Institute for Advanced Study Ningbo China. Institute for Climate and Carbon Neutrality The University of Hong Kong Hong Kong SAR China. Centre for Integrative Ecology School of Life and Environmental Sciences Deakin University Burwood Victoria Australia.

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Author Correction: BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets

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Nature methods 2024年第10期21卷 1959页

作者： Linus Manubens-Gil Zhi Zhou Hanbo Chen Arvind Ramanathan Xiaoxiao Liu Yufeng Liu Alessandro Bria Todd Gillette Zongcai Ruan Jian Yang Miroslav Radojević Ting Zhao Li Cheng Lei Qu Siqi Liu Kristofer E Bouchard Lin Gu Weidong Cai Shuiwang Ji Badrinath Roysam Ching-Wei Wang Hongchuan Yu Amos Sironi Daniel Maxim Iascone Jie Zhou Erhan Bas Eduardo Conde-Sousa Paulo Aguiar Xiang Li Yujie Li Sumit Nanda Yuan Wang Leila Muresan Pascal Fua Bing Ye Hai-Yan He Jochen F Staiger Manuel Peter Daniel N Cox Michel Simonneau Marcel Oberlaender Gregory Jefferis Kei Ito Paloma Gonzalez-Bellido Jinhyun Kim Edwin Rubel Hollis T Cline Hongkui Zeng Aljoscha Nern Ann-Shyn Chiang Jianhua Yao Jane Roskams Rick Livesey Janine Stevens Tianming Liu Chinh Dang Yike Guo Ning Zhong Georgia Tourassi Sean Hill Michael Hawrylycz Christof Koch Erik Meijering Giorgio A Ascoli Hanchuan Peng Institute for Brain and Intelligence Southeast University Nanjing China. Microsoft Corporation Redmond WA USA. Tencent AI Lab Bellevue WA USA. Computing Environment and Life Sciences Directorate Argonne National Laboratory Lemont IL USA. Kaya Medical Seattle WA USA. University of Cassino and Southern Lazio Cassino Italy. Center for Neural Informatics Structures and Plasticity Krasnow Institute for Advanced Study George Mason University Fairfax VA USA. Faculty of Information Technology Beijing University of Technology Beijing China. Beijing International Collaboration Base on Brain Informatics and Wisdom Services Beijing China. Nuctech Netherlands Rotterdam the Netherlands. Janelia Research Campus Howard Hughes Medical Institute Ashburn VA USA. Department of Electrical and Computer Engineering University of Alberta Edmonton Alberta Canada. Ministry of Education Key Laboratory of Intelligent Computation and Signal Processing Anhui University Hefei China. Paige AI New York NY USA. Scientific Data Division and Biological Systems and Engineering Division Lawrence Berkeley National Lab Berkeley CA USA. Helen Wills Neuroscience Institute and Redwood Center for Theoretical Neuroscience UC Berkeley Berkeley CA USA. RIKEN AIP Tokyo Japan. Research Center for Advanced Science and Technology (RCAST) The University of Tokyo Tokyo Japan. School of Computer Science University of Sydney Sydney New South Wales Australia. Texas A&M University College Station TX USA. Cullen College of Engineering University of Houston Houston TX USA. Graduate Institute of Biomedical Engineering National Taiwan University of Science and Technology Taipei Taiwan. National Centre for Computer Animation Bournemouth University Poole UK. PROPHESEE Paris France. Department of Neuroscience Columbia University New York NY USA. Mortimer B. Zuckerman Mind Brain Behavior Institute Columbia University New York NY USA. Department of Computer Science Northern Illinois Universit

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FOUR NOVEL SUSCEPTIBILITY VARIANTS IDENTIFIED IN CHINESE ARE ASSOCIATED WITH SPORADIC ALZHEIMER’S DISEASE

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Alzheimer's & Dementia 2017年第7期13卷 P189-P191页

作者： Jianping Jia Xianbo Zuo Ling Wei Cuibai Wei Kai Wang Luxi Shen Fangyu Li Wei Qin Yi Tang Dantao Peng Lan Tan Benyan Luo Qihao Guo Yong Ji Muni Tang Yanjiang Wang Yifeng Du Jiewen Zhang Junjian Zhang Qiumin Qu Longfei Jia Center of Alzheimer's Disease Beijing Institute for Brain Disorders Beijing China Xuan Wu Hospital Capital Medical University Beijing China Neurodegenerative Laboratory of Ministry of Education of the People’s Republic of China Beijing China Beijing Key Laboratory of Geriatric Cognitive Disorders Beijing China First Affiliated Hospital of Anhui Medical University Hefei China State Key Laboratory Incubation Base of Dermatology Ministry of National Science and Technology Hefei China China-Japan Friendship Hospital Beijing China Qingdao Municipal Hospital School of Medicine Qingdao University Qingdao China First Affiliated Hospital Zhejiang University Hangzhou China Huashan Hospital Fudan University Shanghai China Tianjin Huanhu Hospital Tianjin China Guangzhou Huiai Hospital Affiliated Hospital of Guangzhou Medical College Guangzhou China Daping Hospital Third Military Medical University Chongqing China Shandong Provincial Hospital Shandong University Jinan China Henan Provincial People's Hospital Zhengzhou China Zhongnan Hospital Wuhan University Wuhan China First Affiliated Hospital of Xi'an Jiaotong University Xi'an China Henry Ford Hospital Detroit MI USA

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Addendum: Voxel-based, brain-wide association study of aberrant functional connectivity in schizophrenia implicates thalamocortical circuitry

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NPJ schizophrenia 2018年第1期4卷 19页

作者： Wei Cheng Lena Palaniyappan Mingli Li Keith M Kendrick Jie Zhang Qiang Luo Zening Liu Rongjun Yu Wei Deng Qiang Wang Xiaohong Ma Wanjun Guo Susan Francis Peter Liddle Andrew R Mayer Gunter Schumann Tao Li Jianfeng Feng Centre for Computational Systems Biology Fudan University Shanghai China. Centre for Translational Neuroimaging Division of Psychiatry and Applied Psychology Institute of Mental Health University of Nottingham Nottingham UK. The Mental Health Center and the Psychiatric Laboratory West China Hospital Sichuan University Chengdu China. Key Laboratory for Neuroinformation Ministry of Education of China School of Life Science and Technology University of Electronic Science and Technology of China Chengdu China. Institute of Mental Health Second Xiangya Hospital Central South University Changsha China. School of Psychology and Center for Studies of Psychological Application South China Normal University Guangzhou China. Sir Peter Mansfield MR Centre University of Nottingham Nottingham UK. The Mind Research Network Albuquerque USA. Medical Research Council-Social Genetic and Developmental Psychiatry Centre Institute of Psychiatry King's College London De Crespigny Park London UK. The Mental Health Center and the Psychiatric Laboratory West China Hospital Sichuan University Chengdu China. xuntao26@***. Centre for Computational Systems Biology Fudan University Shanghai China. jianfeng64@***. Department of Computer Science University of Warwick Coventry UK. jianfeng64@***. School of Life Science and the Collaborative Innovation Center for Brain Science Fudan University Shanghai China. jianfeng64@***.

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Correction: Individual-specific functional connectivity markers track dimensional and categorical features of psychotic illness

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Molecular psychiatry 2020年第9期25卷 2200页

作者： Danhong Wang Meiling Li Meiyun Wang Franziska Schoeppe Jianxun Ren Huafu Chen Dost Öngür Roscoe O Brady Justin T Baker Hesheng Liu Athinoula A. Martinos Center for Biomedical Imaging Department of Radiology Massachusetts General Hospital Harvard Medical School Charlestown MA USA. Key Laboratory for NeuroInformation of Ministry of Education School of Life Science and Technology University of Electronic Science and Technology of China Chengdu China. Department of Radiology Henan Provincial People's Hospital Zhengzhou China. Psychotic Disorders Division McLean Hospital Harvard Medical School Belmont MA USA. Department of Psychiatry Beth Israel Deaconess Medical Center Harvard Medical School Boston MA USA. Psychotic Disorders Division McLean Hospital Harvard Medical School Belmont MA USA. jtbaker@***. Athinoula A. Martinos Center for Biomedical Imaging Department of Radiology Massachusetts General Hospital Harvard Medical School Charlestown MA USA. hesheng@nmr.mgh.harvard.edu. Department of Radiology Henan Provincial People's Hospital Zhengzhou China. hesheng@nmr.mgh.harvard.edu. Institute for Research and Medical Consultations Imam Abdulahman Bin Faisal University Dammam Saudi Arabia. hesheng@nmr.mgh.harvard.edu. Beijing Institute for Brain Disorders Capital Medical University Beijing China. hesheng@nmr.mgh.harvard.edu.

The original version of this article omitted the author "Roscoe O. Brady Jr." from the "Psychotic Disorders Division, McLean Hospital, Harvard Medical School, Belmont, MA, USA" and the "Department of Psychiatry, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA". This has been corrected in both the PDF and HTML versions of the article.

关键词： Bipolar disorder Neuroscience Schizophrenia

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MedShapeNet - A Large-Scale Dataset of 3D Medical Shapes for computer Vision

arXiv

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arXiv 2023年

作者： Li, Jianning Zhou, Zongwei Yang, Jiancheng Pepe, Antonio Gsaxner, Christina Luijten, Gijs Qu, Chongyu Zhang, Tiezheng Chen, Xiaoxi Li, Wenxuan Wodzinski, Marek Friedrich, Paul Xie, Kangxian Jin, Yuan Ambigapathy, Narmada Nasca, Enrico Solak, Naida Melito, Gian Marco Vu, Viet Duc Memon, Afaque R. Schlachta, Christopher De Ribaupierre, Sandrine Patel, Rajnikant Eagleson, Roy Chen, Xiaojun Mächler, Heinrich Kirschke, Jan Stefan de la Rosa, Ezequiel Christ, Patrick Ferdinand Li, Hongwei Bran Ellis, David G. Aizenberg, Michele R. Gatidis, Sergios Küstner, Thomas Shusharina, Nadya Heller, Nicholas Andrearczyk, Vincent Depeursinge, Adrien Hatt, Mathieu Sekuboyina, Anjany Löffler, Maximilian Liebl, Hans Dorent, Reuben Vercauteren, Tom Shapey, Jonathan Kujawa, Aaron Cornelissen, Stefan Langenhuizen, Patrick Ben-Hamadou, Achraf Rekik, Ahmed Pujades, Sergi Boyer, Edmond Bolelli, Federico Grana, Costantino Lumetti, Luca Salehi, Hamidreza Ma, Jun Zhang, Yao Gharleghi, Ramtin Beier, Susann Sowmya, Arcot Garza-Villarreal, Eduardo A. Balducci, Thania Angeles-Valdez, Diego Souza, Roberto Rittner, Leticia Frayne, Richard Ji, Yuanfeng Ferrari, Vincenzo Chatterjee, Soumick Dubost, Florian Schreiber, Stefanie Mattern, Hendrik Speck, Oliver Haehn, Daniel John, Christoph Nürnberger, Andreas Pedrosa, João Ferreira, Carlos Aresta, Guilherme Cunha, António Campilho, Aurélio Suter, Yannick Garcia, Jose Lalande, Alain Vandenbossche, Vicky Van Oevelen, Aline Duquesne, Kate Mekhzoum, Hamza Vandemeulebroucke, Jef Audenaert, Emmanuel Krebs, Claudia van Leeuwen, Timo Vereecke, Evie Heidemeyer, Hauke Röhrig, Rainer Hölzle, Frank Badeli, Vahid Krieger, Kathrin Gunzer, Matthias Chen, Jianxu van Meegdenburg, Timo Dada, Amin Balzer, Miriam Fragemann, Jana Jonske, Frederic Rempe, Moritz Malorodov, Stanislav Bahnsen, Fin H. Seibold, Constantin Jaus, Alexander Marinov, Zdravko Jaeger, Paul F. Stiefelhagen, Rainer Santos, Ana Sofia Lindo, Mariana Ferreira, André Alves, Victor Kamp, Michael Abourayya, Amr Nensa, Felix Hörst, Fabian Brehmer, Alexander Hein Girardetstraße 2 Essen45131 Germany Graz University of Technology Inffeldgasse 16c Graz8010 Austria Graz Austria The Department of Computer Science Johns Hopkins University Malone Hall 3400 N Charles St BaltimoreMD21218 United States Rte Cantonale Lausanne1015 Switzerland The Department of Measurement and Electronics AGH University of Science and Technology Krakow Poland Sierre Switzerland Department of Biomedical Engineering University of Basel Hegenheimermattweg Allschwil167C CH-4123 Switzerland The Boston College 140 Commonwealth Ave Chestnut HillMA02467 United States University Hospital B7-200 339 Windermere Road LondonN6A 5A5 Canada The Department of Radiology Renji Hospital School of Medicine Shanghai Jiao Tong University Shanghai200240 China The Research Center for Connected Healthcare Big Data ZhejiangLab Zhejiang Hangzhou311121 China The Faculty of Statistics Technical University Dortmund August-Schmidt-Straße 1 Dortmund44227 Germany The Institute of Mechanics Graz University of Technology Kopernikusgasse 24/IV Graz8010 Austria The Institute of Biomedical Manufacturing and Life Quality Engineering State Key Laboratory of Mechanical System and Vibration School of Mechanical Engineering Shanghai Jiao Tong University 800 Dongchuan Road Shanghai200240 China The Department of Cardiac Surgery Medical University Graz Auenbruggerplatz 29 Graz8036 Austria The Department of Diagnostic and Interventional Radiology University Hospital Giessen Justus-Liebig-University Giessen Klinikstraße 33 Giessen35392 Germany The Department of Mechanical Engineering Mehran University of Engineering and Technology Jamshoro Sindh76062 Pakistan The Institute of Medical Robotics Shanghai Jiao Tong University Shanghai China The Geschäftsführender Oberarzt Abteilung für Interventionelle und Diagnostische Neuroradiologie Universitätsklinikum der Technischen Universität München Ismaningerstr. 22 München81675 Germany icometrix Kolonel Be

Prior to the deep learning era, shape was commonly used to describe the objects. Nowadays, state-of-the-art (SOTA) algorithms in medical imaging are predominantly diverging from computer vision, where voxel grids, meshes, point clouds, and implicit surface models are used. This is seen from numerous shape-related publications in premier vision conferences as well as the growing popularity of ShapeNet (about 51,300 models) and Princeton ModelNet (127,915 models). For the medical domain, we present a large collection of anatomical shapes (e.g., bones, organs, vessels) and 3D models of surgical instrument, called MedShapeNet, created to facilitate the translation of data-driven vision algorithms to medical applications and to adapt SOTA vision algorithms to medical problems. As a unique feature, we directly model the majority of shapes on the imaging data of real patients. As of today, MedShapeNet includes 23 datasets with more than 100,000 shapes that are paired with annotations (ground truth). Our data is freely accessible via a web interface and a Python application programming interface (API) and can be used for discriminative, reconstructive, and variational benchmarks as well as various applications in virtual, augmented, or mixed reality, and 3D printing. Exemplary, we present use cases in the fields of classification of brain tumors, skull reconstructions, multi-class anatomy completion, education, and 3D printing. In future, we will extend the data and improve the interfaces. The project pages are: https://***/ and https://***/Jianningli/*** Codes 68T01 © 2023, CC BY.

关键词： Large dataset

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Gene expression imputation across multiple brain regions provides insights into schizophrenia risk (vol 51, pg 659, 2019)

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NATURE GENETICS 2019年第6期51卷 1068-1068页

作者： Huckins, Laura M. Dobbyn, Amanda Ruderfer, Douglas M. Hoffman, Gabriel Wang, Weiqing Pardinas, Antonio F. Rajagopal, Veera M. Als, Thomas D. Nguyen, Hoang T. Girdhar, Kiran Boocock, James Roussos, Panos Fromer, Menachem Kramer, Robin Domenici, Enrico Gamazon, Eric R. Purcell, Shaun Demontis, Ditte Borglum, Anders D. Walters, James T. R. O'Donovan, Michael C. Sullivan, Patrick Owen, Michael J. Devlin, Bernie Sieberts, Solveig K. Cox, Nancy J. Im, Hae Kyung Sklar, Pamela Stahl, Eli A. Pamela Sklar Division of Psychiatric Genomics Icahn School of Medicine at Mount Sinai New York NY USA Department of Genetics and Genomics Icahn School of Medicine at Mount Sinai New York NY USA Department of Psychiatry Icahn School of Medicine at Mount Sinai New York NY USA Icahn Institute for Genomics and Multiscale Biology Icahn School of Medicine at Mount Sinai New York NY USA Vanderbilt University Medical Center Nashville TN USA MRC Centre for Neuropsychiatric Genetics and Genomics Cardiff University Cardiff UK Department of Biomedicine Aarhus University Aarhus Denmark The Lundbeck Foundation Initiative for Integrative Psychiatric Research iPSYCH Denmark Center for Integrative Sequencing Aarhus University Aarhus Denmark Department of Human Genetics David Geffen School of Medicine University of California Los Angeles Los Angeles CA USA Human Brain Collection Core National Institute of Mental Health Bethesda MD USA Laboratory of Neurogenomic Biomarkers Centre for Integrative Biology (CIBIO) University of Trento Trento Italy Clare Hall University of Cambridge Cambridge UK University of North Carolina at Chapel Hill Chapel Hill NC USA Karolinska Institutet Stockholm Sweden Department of Psychiatry University of Pittsburgh Pittsburgh PA USA Systems Biology Sage Bionetworks Seattle WA USA Section of Genetic Medicine Department of Medicine University of Chicago Chicago IL USA Integrated Technology Research Laboratories Pharmaceutical Research Division Takeda Pharmaceutical Company Limited Fujisawa Japan Neuropsychiatry Section Department of Psychiatry Perelman School of Medicine University of Pennsylvania Philadelphia PA USA Neuropsychiatric Signaling Program Department of Psychiatry Perelman School of Medicine University of Pennsylvania Philadelphia PA USA Psychiatry JJ Peters Virginia Medical Center Bronx NY USA Department of Neuroscience Icahn School of Medicine at Mount Sinai New York New York NY USA Friedman Brain Institute

Transcriptomic imputation approaches combine eQTL reference panels with large-scale genotype data in order to test associations between disease and gene expression. These genic associations could elucidate signals in complex genome-wide association study (GWAS) loci and may disentangle the role of different tissues in disease development. We used the largest eQTL reference panel for the dorso-lateral prefrontal cortex (DLPFC) to create a set of gene expression predictors and demonstrate their utility. We applied DLPFC and 12 GTEx-brain predictors to 40,299 schizophrenia cases and 65,264 matched controls for a large transcriptomic imputation study of schizophrenia. We identified 413 genic associations across 13 brain regions. Stepwise conditioning identified 67 non-MHC genes, of which 14 did not fall within previous GWAS loci. We identified 36 significantly enriched pathways, including hexosaminidase-A deficiency, and multiple porphyric disorder pathways. We investigated developmental expression patterns among the 67 non-MHC genes and identified specific groups of pre- and postnatal expression.

关键词： Gene expression Genome-wide association studies Schizophrenia Transcriptomics

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