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AtlFast3: The Next Generation of Fast Simulation in ATLAS

Computing and Software for Big Science 2022年第1期6卷 1-54页

作者： Aad, G. Abbott, B. Abbott, D.C. Abud, A. Abed Abeling, K. Abhayasinghe, D.K. Abidi, S.H. Aboulhorma, A. Abramowicz, H. Abreu, H. Abulaiti, Y. Hoffman, A. C. Abusleme Acharya, B.S. Achkar, B. Adam, L. Bourdarios, C. Adam Adamczyk, L. Adamek, L. Addepalli, S.V. Adelman, J. Adiguzel, A. Adorni, S. Adye, T. Affolder, A.A. Afik, Y. Agapopoulou, C. Agaras, M.N. Agarwala, J. Aggarwal, A. Agheorghiesei, C. Aguilar-Saavedra, J.A. Ahmad, A. Ahmadov, F. Ahmed, W.S. Ai, X. Aielli, G. Aizenberg, I. Akatsuka, S. Akbiyik, M. Åkesson, T.P.A. Akimov, A.V. Khoury, K. Al Alberghi, G.L. Albert, J. Albicocco, P. Verzini, M. J. Alconada Alderweireldt, S. Aleksa, M. Aleksandrov, I.N. Alexa, C. Alexopoulos, T. Alfonsi, A. Alfonsi, F. Alhroob, M. Ali, B. Ali, S. Aliev, M. Alimonti, G. Allaire, C. Allbrooke, B.M.M. Allport, P.P. Aloisio, A. Alonso, F. Alpigiani, C. Camelia, E. Alunno Estevez, M. Alvarez Alviggi, M.G. Coutinho, Y. Amaral Ambler, A. Ambroz, L. Amelung, C. Amidei, D. Santos, S. P. Amor Dos Amoroso, S. Amos, K.R. Amrouche, C.S. Ananiev, V. Anastopoulos, C. Andari, N. Andeen, T. Anders, J.K. Andrean, S.Y. Andreazza, A. Angelidakis, S. Angerami, A. Anisenkov, A.V. Annovi, A. Antel, C. Anthony, M.T. Antipov, E. Antonelli, M. Antrim, D.J.A. Anulli, F. Aoki, M. Pozo, J. A. Aparisi Aparo, M.A. Bella, L. Aperio Aranzabal, N. Ferraz, V. Araujo Arcangeletti, C. Arce, A.T.H. Arena, E. Arguin, J.-F. Argyropoulos, S. Arling, J.-H. Armbruster, A.J. Armstrong, A. Arnaez, O. Arnold, H. Tame, Z. P. Arrubarrena Artoni, G. Asada, H. Asai, K. Asai, S. Asbah, N.A. Asimakopoulou, E.M. Asquith, L. Assahsah, J. Assamagan, K. Astalos, R. Atkin, R.J. Atkinson, M. Atlay, N.B. Atmani, H. Atmasiddha, P.A. Augsten, K. Auricchio, S. Austrup, V.A. Avner, G. Avolio, G. Ayoub, M.K. Azuelos, G. Babal, D. Bachacou, H. Bachas, K. Bachiu, A. Backman, F. Badea, A. Bagnaia, P. Bahrasemani, H. Bailey, A.J. Bailey, V.R. Baines, J.T. Bakalis, C. Baker, O.K. Bakker, P.J. Bakos, E. Gupta, D. Bakshi Balaji, S. Balasubramanian, R. Baldin, E.M. Balek, P. Ballabene, E. Bal Department of Physics University of Adelaide Adelaide Australia Department of Physics University of Alberta Edmonton AB Canada Department of Physics Ankara University Ankara Turkey Division of Physics TOBB University of Economics and Technology Ankara Turkey LAPP Univ. Savoie Mont Blanc CNRS/IN2P3 Annecy France High Energy Physics Division Argonne National Laboratory Argonne IL United States Department of Physics University of Arizona Tucson AZ United States Department of Physics University of Texas at Arlington Arlington TX United States Physics Department National and Kapodistrian University of Athens Athens Greece Physics Department National Technical University of Athens Zografou Greece Department of Physics University of Texas at Austin Austin TX United States Bahcesehir University Faculty of Engineering and Natural Sciences Istanbul Turkey Istanbul Bilgi University Faculty of Engineering and Natural Sciences Istanbul Turkey Department of Physics Bogazici University Istanbul Turkey Department of Physics Engineering Gaziantep University Gaziantep Turkey Institut de Física d’Altes Energies (IFAE) Barcelona Institute of Science and Technology Barcelona Spain Institute of High Energy Physics Chinese Academy of Sciences Beijing China Physics Department Tsinghua University Beijing China Department of Physics Nanjing University Nanjing China University of Chinese Academy of Science (UCAS) Beijing China Institute of Physics University of Belgrade Belgrade Serbia Department for Physics and Technology University of Bergen Bergen Norway Physics Division Lawrence Berkeley National Laboratory and University of California Berkeley CA United States Institut für Physik Humboldt Universität zu Berlin Berlin Germany Albert Einstein Center for Fundamental Physics and Laboratory for High Energy Physics University of Bern Bern Switzerland School of Physics and Astronomy University of Birmingham Birmingham United Kingdom Facultad de Ciencias y Cen

The ATLAS experiment at the Large Hadron Collider has a broad physics programme ranging from precision measurements to direct searches for new particles and new interactions, requiring ever larger and ever more accurate datasets of simulated Monte Carlo events. Detector simulation with Geant4 is accurate but requires significant CPU resources. Over the past decade, ATLAS has developed and utilized tools that replace the most CPU-intensive component of the simulation—the calorimeter shower simulation—with faster simulation methods. Here, AtlFast3, the next generation of high-accuracy fast simulation in ATLAS, is introduced. AtlFast3 combines parameterized approaches with machine-learning techniques and is deployed to meet current and future computing challenges, and simulation needs of the ATLAS experiment. With highly accurate performance and significantly improved modelling of substructure within jets, AtlFast3 can simulate large numbers of events for a wide range of physics processes. © 2022, Springer Nature Switzerland AG.

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The repertoire of mutational signatures in human cancer (vol 578, pg 94, 2020)

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NATURE 2023年第7948期614卷 E41-E41页

作者： Alexandrov, Ludmil B. Kim, Jaegil Haradhvala, Nicholas J. Huang, Mi Ni Ng, Alvin Wei Tian Wu, Yang Boot, Arnoud Covington, Kyle R. Gordenin, Dmitry A. Bergstrom, Erik N. Islam, S. M. Ashiqul Lopez-Bigas, Nuria Klimczak, Leszek J. McPherson, John R. Morganella, Sandro Sabarinathan, Radhakrishnan Wheeler, David A. Mustonen, Ville Getz, Gad Rozen, Steven G. Stratton, Michael R. Department of Cellular and Molecular Medicine Department of Bioengineering Moores Cancer Center University of California San Diego CA USA Wellcome Sanger Institute Wellcome Genome Campus Hinxton UK Department of Cellular and Molecular Medicine and Department of Bioengineering University of California San Diego La Jolla CA USA UC San Diego Moores Cancer Center San Diego CA USA University of California San Diego San Diego CA USA Broad Institute of MIT and Harvard Cambridge MA USA Center for Cancer Research Massachusetts General Hospital Boston MA USA Massachusetts General Hospital Boston MA USA Department of Pathology Massachusetts General Hospital Boston MA USA Harvard Medical School Boston MA USA Laboratory for Medical Science Mathematics RIKEN Center for Integrative Medical Sciences Yokohama Japan Computational Biology Program Ontario Institute for Cancer Research Toronto ON Canada Programme in Cancer & Stem Cell Biology Duke-NUS Medical School Singapore Singapore Centre for Computational Biology Duke-NUS Medical School Singapore Singapore Programme in Cancer and Stem Cell Biology Duke-NUS Medical School Singapore Singapore Programme in Cancer and Stem Cell Biology Centre for Computational Biology Duke-NUS Medical School Singapore Singapore SingHealth Duke-NUS Institute of Precision Medicine National Heart Centre Singapore Singapore Singapore Cancer Science Institute of Singapore National University of Singapore Singapore Singapore Institute of Molecular and Cell Biology Singapore Singapore Laboratory of Cancer Epigenome Division of Medical Science National Cancer Centre Singapore Singapore Singapore Duke-NUS Medical School Singapore Singapore Human Genome Sequencing Center Baylor College of Medicine Houston TX USA Dan L. Duncan Cancer Center Baylor College of Medicine Houston TX USA Department of Molecular and Human Genetics Baylor College of Medicine Houston TX USA Genome Integrity and Structural Biology Laboratory National Ins

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Mapping geographical inequalities in childhood diarrhoeal morbidity and mortality in low-income and middle-income countries, 2000-17: analysis for the Global Burden of Disease Study 2017 (vol 395, pg 1779, 2020)

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LANCET 2020年第10239期395卷 1762-1762页

作者： Reiner, R. C., Jr. Hay, S., I Institute for Health Metrics and Evaluation University of Washington Seattle WA United States Department of Global Health School of Medicine University of Washington Seattle WA United States Department of Health Metrics Sciences School of Medicine University of Washington Seattle WA United States College of Health and Medical Sciences Haramaya University Harar Ethiopia Department of Epidemiology and Biostatistics Haramaya University Harar Ethiopia Department of Medical Laboratory Sciences Haramaya University Harar Ethiopia School of Nursing and Midwifery Haramaya University Harar Ethiopia School of Pharmacy Haramaya University Harar Ethiopia School of Public Health Haramaya University Harar Ethiopia Haramaya University Harar Ethiopia Advanced Diagnostic and Interventional Radiology Research Center Tehran University of Medical Sciences Tehran Iran Cancer Biology Research Center Tehran University of Medical Sciences Tehran Iran Cancer Research Institute Tehran University of Medical Sciences Tehran Iran Department of Economics and Management Sciences for Health Tehran University of Medical Sciences Tehran Iran Department of Environmental Health Engineering Tehran University of Medical Sciences Tehran Iran Department of Epidemiology and Biostatistics Tehran University of Medical Sciences Tehran Iran Department of Health Management and Economics Tehran University of Medical Sciences Tehran Iran Department of Microbiology Tehran University of Medical Sciences Tehran Iran Department of Pharmacology Tehran University of Medical Sciences Tehran Iran Digestive Diseases Research Institute Tehran University of Medical Sciences Tehran Iran Endocrinology and Metabolism Research Center Tehran University of Medical Sciences Tehran Iran Hematology-Oncology and Stem Cell Transplantation Research Center Tehran University of Medical Sciences Tehran Iran Iran National Institute of Health Research Tehran University of Medical Sciences Tehran Iran Metabolomics and

Summary Background Across low-income and middle-income countries (LMICs), one in ten deaths in children younger than 5 years is attributable to diarrhoea. The substantial between-country variation in both diarrhoea incidence and mortality is attributable to interventions that protect children, prevent infection, and treat disease. Identifying subnational regions with the highest burden and mapping associated risk factors can aid in reducing preventable childhood *** We used Bayesian model-based geostatistics and a geolocated dataset comprising 15 072 746 children younger than 5 years from 466 surveys in 94 LMICs, in combination with findings of the Global Burden of Diseases, Injuries, and Risk Factors Study (GBD) 2017, to estimate posterior distributions of diarrhoea prevalence, incidence, and mortality from 2000 to 2017. From these data, we estimated the burden of diarrhoea at varying subnational levels (termed units) by spatially aggregating draws, and we investigated the drivers of subnational patterns by creating aggregated risk factor *** The greatest declines in diarrhoeal mortality were seen in south and southeast Asia and South America, where 54·0% (95% uncertainty interval [UI] 38·1-65·8), 17·4% (7·7-28·4), and 59·5% (34·2-86·9) of units, respectively, recorded decreases in deaths from diarrhoea greater than 10%. Although children in much of Africa remain at high risk of death due to diarrhoea, regions with the most deaths were outside Africa, with the highest mortality units located in Pakistan. Indonesia showed the greatest within-country geographical inequality; some regions had mortality rates nearly four times the average country rate. Reductions in mortality were correlated to improvements in water, sanitation, and hygiene (WASH) or reductions in child growth failure (CGF). Similarly, most high-risk areas had poor WASH, high CGF, or low oral rehydration therapy *** By co-analysing geospatial trends in d

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Systematic study of flow vector fluctuations in sNN=5.02 TeV Pb-Pb collisions

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Physical Review C 2024年第6期109卷 065202-065202页

作者： S. Acharya D. Adamová A. Agarwal G. Aglieri Rinella L. Aglietta M. Agnello N. Agrawal Z. Ahammed S. Ahmad S. U. Ahn I. Ahuja A. Akindinov V. Akishina M. Al-Turany D. Aleksandrov B. Alessandro H. M. Alfanda R. Alfaro Molina B. Ali A. Alici N. Alizadehvandchali A. Alkin J. Alme G. Alocco T. Alt A. R. Altamura I. Altsybeev J. R. Alvarado M. N. Anaam C. Andrei N. Andreou A. Andronic E. Andronov V. Anguelov F. Antinori P. Antonioli N. Apadula L. Aphecetche H. Appelshäuser C. Arata S. Arcelli M. Aresti R. Arnaldi J. G. M. C. A. Arneiro I. C. Arsene M. Arslandok A. Augustinus R. Averbeck M. D. Azmi H. Baba A. Badalà J. Bae Y. W. Baek X. Bai R. Bailhache Y. Bailung R. Bala A. Balbino A. Baldisseri B. Balis D. Banerjee Z. Banoo V. Barbasova F. Barile L. Barioglio M. Barlou B. Barman G. G. Barnaföldi L. S. Barnby E. Barreau V. Barret L. Barreto C. Bartels K. Barth E. Bartsch N. Bastid S. Basu G. Batigne D. Battistini B. Batyunya D. Bauri J. L. Bazo Alba I. G. Bearden C. Beattie P. Becht D. Behera I. Belikov A. D. C. Bell Hechavarria F. Bellini R. Bellwied S. Belokurova L. G. E. Beltran Y. A. V. Beltran G. Bencedi A. Bensaoula S. Beole Y. Berdnikov A. Berdnikova L. Bergmann M. G. Besoiu L. Betev P. P. Bhaduri A. Bhasin M. A. Bhat B. Bhattacharjee L. Bianchi N. Bianchi J. Bielčík J. Bielčíková A. P. Bigot A. Bilandzic G. Biro S. Biswas N. Bize J. T. Blair D. Blau M. B. Blidaru N. Bluhme C. Blume G. Boca F. Bock T. Bodova J. Bok L. Boldizsár M. Bombara P. M. Bond G. Bonomi H. Borel A. Borissov A. G. Borquez Carcamo H. Bossi E. Botta Y. E. M. Bouziani L. Bratrud P. Braun-Munzinger M. Bregant M. Broz G. E. Bruno M. D. Buckland D. Budnikov H. Buesching S. Bufalino P. Buhler N. Burmasov Z. Buthelezi A. Bylinkin S. A. Bysiak J. C. Cabanillas Noris M. F. T. Cabrera M. Cai H. Caines A. Caliva E. Calvo Villar J. M. M. Camacho P. Camerini F. D. M. Canedo S. L. Cantway M. Carabas A. A. Carballo F. Carnesecchi R. Caron L. A. D. Carvalho J. Castillo Castellanos M. Castoldi F. Catalano S. Cattaruzzi C. Ceballos Sanchez R. Cerri I. Chakabe CNRS/IN2P3 LPC Clermont-Ferrand France Nuclear Physics Institute of the Czech Academy of Sciences Husinec-Řež Czech Republic Homi Bhabha National Institute Kolkata India Geneva Switzerland and Sezione INFN Turin Italy and Sezione INFN Bologna Italy Department of Physics Daejeon Republic of Korea Faculty of Science Affiliated with an institute covered by a cooperation agreement with CERN Frankfurt Institute for Advanced Studies Research Division and ExtreMe Matter Institute EMMI Turin Italy Wuhan China Instituto de Física Houston Texas USA Sungkyunkwan University Suwon City Republic of Korea Department of Physics and Technology Cagliari Italy Institut für Kernphysik Bari Italy Physik Department Technische Universität München Munich Germany High Energy Physics Group Bucharest Romania University of Derby Derby United Kingdom Institut für Kernphysik Münster Germany Physikalisches Institut Padova Italy Bologna Italy Berkeley California USA SUBATECH Université Grenoble-Alpes CNRS-IN2P3 Grenoble France and Sezione INFN Cagliari Italy São Paulo Brazil New Haven Connecticut USA Tokyo Japan Catania Italy Gangneung Republic of Korea Hefei China Indore India Physics Department Université Paris-Saclay Centre d'Etudes de Saclay (CEA) IRFU Départment de Physique Nucléaire (DPhN) Saclay France Cracow Poland Department of Physics and Centre for Astroparticle Physics and Space Science (CAPSS) Kolkata India and Sezione INFN Bari Italy School of Science Department of Physics Athens Greece Department of Physics Guwahati India Budapest Hungary Liverpool United Kingdom Department of Physics Division of Particle Physics Lund Sweden Affiliated with an international laboratory covered by a cooperation agreement with CERN Mumbai India Sección Física Departamento de Ciencias Niels Bohr Institute CNRS IPHC UMR 7178 F-67000 Strasbourg France Strasbourg France Universidad Autónoma de Sinaloa Culiacá

Measurements of the pT-dependent flow vector fluctuations in Pb–Pb collisions at sNN=5.02TeV using azimuthal correlations with the ALICE experiment at the Large Hadron Collider are presented. A four-particle correlation approach [ALICE Collaboration, Phys. Rev. C 107, L051901 (2023)] is used to quantify the effects of flow angle and magnitude fluctuations separately. This paper extends previous studies to additional centrality intervals and provides measurements of the pT-dependent flow vector fluctuations at sNN=5.02TeV with two-particle correlations. Significant pT-dependent fluctuations of the V⃗2 flow vector in Pb–Pb collisions are found across different centrality ranges, with the largest fluctuations of up to ∼15% being present in the 5% most central collisions. In parallel, no evidence of significant pT-dependent fluctuations of V⃗3 or V⃗4 is found. Additionally, evidence of flow angle and magnitude fluctuations is observed with more than 5σ significance in central collisions. These observations in Pb–Pb collisions indicate where the classical picture of hydrodynamic modeling with a common symmetry plane breaks down. This has implications for hard probes at high pT, which might be biased by pT-dependent flow angle fluctuations of at least 23% in central collisions. Given the presented results, existing theoretical models should be reexamined to improve our understanding of initial conditions, quark–gluon plasma properties, and the dynamic evolution of the created system.

关键词： Particle correlations & fluctuations Quark-gluon plasma Relativistic heavy-ion collisions

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Measurements of jet quenching using semi-inclusive hadron+jet distributions in pp and central Pb-Pb collisions at sNN=5.02 TeV

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Physical Review C 2024年第1期110卷 014906-014906页

作者： S. Acharya D. Adamová G. Aglieri Rinella M. Agnello N. Agrawal Z. Ahammed S. Ahmad S. U. Ahn I. Ahuja A. Akindinov M. Al-Turany D. Aleksandrov B. Alessandro H. M. Alfanda R. Alfaro Molina B. Ali A. Alici N. Alizadehvandchali A. Alkin J. Alme G. Alocco T. Alt A. R. Altamura I. Altsybeev J. R. Alvarado M. N. Anaam C. Andrei N. Andreou A. Andronic V. Anguelov F. Antinori P. Antonioli N. Apadula L. Aphecetche H. Appelshäuser C. Arata S. Arcelli M. Aresti R. Arnaldi J. G. M. C. A. Arneiro I. C. Arsene M. Arslandok A. Augustinus R. Averbeck M. D. Azmi H. Baba A. Badalà J. Bae Y. W. Baek X. Bai R. Bailhache Y. Bailung A. Balbino A. Baldisseri B. Balis D. Banerjee Z. Banoo R. Barbera F. Barile L. Barioglio M. Barlou B. Barman G. G. Barnaföldi L. S. Barnby V. Barret L. Barreto C. Bartels K. Barth E. Bartsch N. Bastid S. Basu G. Batigne D. Battistini B. Batyunya D. Bauri J. L. Bazo Alba I. G. Bearden C. Beattie P. Becht D. Behera I. Belikov A. D. C. Bell Hechavarria F. Bellini R. Bellwied S. Belokurova Y. A. V. Beltran G. Bencedi S. Beole Y. Berdnikov A. Berdnikova L. Bergmann M. G. Besoiu L. Betev P. P. Bhaduri A. Bhasin M. A. Bhat B. Bhattacharjee L. Bianchi N. Bianchi J. Bielčík J. Bielčíková J. Biernat A. P. Bigot A. Bilandzic G. Biro S. Biswas N. Bize J. T. Blair D. Blau M. B. Blidaru N. Bluhme C. Blume G. Boca F. Bock T. Bodova A. Bogdanov S. Boi J. Bok L. Boldizsár M. Bombara P. M. Bond G. Bonomi H. Borel A. Borissov A. G. Borquez Carcamo H. Bossi E. Botta Y. E. M. Bouziani L. Bratrud P. Braun-Munzinger M. Bregant M. Broz G. E. Bruno M. D. Buckland D. Budnikov H. Buesching S. Bufalino P. Buhler N. Burmasov Z. Buthelezi A. Bylinkin S. A. Bysiak M. Cai H. Caines A. Caliva E. Calvo Villar J. M. M. Camacho P. Camerini F. D. M. Canedo S. L. Cantway M. Carabas A. A. Carballo F. Carnesecchi R. Caron L. A. D. Carvalho J. Castillo Castellanos F. Catalano C. Ceballos Sanchez I. Chakaberia P. Chakraborty S. Chandra S. Chapeland M. Chartier S. Chattopadhyay T. Cheng C. Cheshkov B. Cheynis V. Chibante Barroso D. D. Chinellato E. CNRS/IN2P3 LPC Clermont-Ferrand France Nuclear Physics Institute of the Czech Academy of Sciences Husinec-Řež Czech Republic Geneva Switzerland Turin Italy Bologna Italy Homi Bhabha National Institute Kolkata India Department of Physics Daejeon Republic of Korea Faculty of Science Affiliated with an institute covered by a cooperation agreement with CERN Research Division and ExtreMe Matter Institute EMMI Wuhan China Instituto de Física and Sezione INFN Bologna Italy Houston Texas USA Department of Physics and Technology Cagliari Italy Institut für Kernphysik Bari Italy Physik Department Technische Universität München Munich Germany High Energy Physics Group Bucharest Romania University of Derby Derby United Kingdom Institut für Kernphysik Münster Germany Physikalisches Institut Padova Italy Berkeley California USA SUBATECH IMT Atlantique Université Grenoble-Alpes CNRS-IN2P3 Grenoble France and Sezione INFN Cagliari Italy São Paulo Brazil New Haven Connecticut USA Tokyo Japan Catania Italy Sungkyunkwan University Suwon City Republic of Korea Gangneung Republic of Korea Hefei China Indore India Université Paris-Saclay Centre d'Etudes de Saclay (CEA) IRFU Départment de Physique Nucléaire (DPhN) Saclay France Cracow Poland Department of Physics and Centre for Astroparticle Physics and Space Science (CAPSS) Kolkata India Physics Department and Sezione INFN Catania Italy and Sezione INFN Bari Italy School of Science Department of Physics Athens Greece Department of Physics Guwahati India Budapest Hungary Nuclear Physics Group STFC Liverpool United Kingdom Department of Physics Division of Particle Physics Lund Sweden Affiliated with an international laboratory covered by a cooperation agreement with CERN Mumbai India Sección Física Departamento de Ciencias Niels Bohr Institute CNRS IPHC UMR 7178 F-67000 Strasbourg France Strasbourg France and Sezione INFN Turin Italy INFN

The ALICE Collaboration reports measurements of the semi-inclusive distribution of charged-particle jets recoiling from a high transverse momentum (high pT) charged hadron, in pp and central Pb-Pb collisions at center-of-mass energy per nucleon–nucleon collision sNN=5.02 TeV. The large uncorrelated background in central Pb-Pb collisions is corrected using a data-driven statistical approach which enables precise measurement of recoil jet distributions over a broad range in pT,chjet and jet resolution parameter R. Recoil jet yields are reported for R=0.2, 0.4, and 0.5 in the range 7

关键词： Jet quenching Quark & gluon jets Quark-gluon plasma Relativistic heavy-ion collisions Strong interaction

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The evolutionary history of 2,658 cancers (vol 578, pg 122, 2020)

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NATURE 2023年第7948期614卷 E42-E42页

作者： Gerstung, Moritz Jolly, Clemency Leshchiner, Ignaty Dentro, Stefan C. Gonzalez, Santiago Rosebrock, Daniel Mitchell, Thomas J. Rubanova, Yulia Anur, Pavana Yu, Kaixian Tarabichi, Maxime Deshwar, Amit Wintersinger, Jeff Kleinheinz, Kortine Vazquez-Garcia, Ignacio Haase, Kerstin Jerman, Lara Sengupta, Subhajit Macintyre, Geoff Malikic, Salem Donmez, Nilgun Livitz, Dimitri G. Cmero, Marek Demeulemeester, Jonas Schumacher, Steven Fan, Yu Yao, Xiaotong Lee, Juhee Schlesner, Matthias Boutros, Paul C. Bowtell, David D. Zhu, Hongtu Getz, Gad Imielinski, Marcin Beroukhim, Rameen Sahinalp, S. Cenk Ji, Yuan Peifer, Martin Markowetz, Florian Mustonen, Ville Yuan, Ke Wang, Wenyi Morris, Quaid D. Spellman, Paul T. Wedge, David C. Van Loo, Peter European Molecular Biology Laboratory European Bioinformatics Institute (EMBL-EBI) Cambridge UK European Molecular Biology Laboratory Genome Biology Unit Heidelberg Germany Wellcome Sanger Institute Cambridge UK Genome Biology Unit European Molecular Biology Laboratory (EMBL) Heidelberg Germany University of Ljubljana Ljubljana Slovenia The Francis Crick Institute London UK Big Data Institute University of Oxford Oxford UK Wellcome Sanger Institute Wellcome Genome Campus Hinxton UK Big Data Institute Li Ka Shing Centre University of Oxford Oxford UK University of Cambridge Cambridge UK Cambridge University Hospitals NHS Foundation Trust Cambridge UK Department of Applied Mathematics and Theoretical Physics Centre for Mathematical Sciences University of Cambridge Cambridge UK Department of Epidemiology and Biostatistics Memorial Sloan Kettering Cancer Center New York NY USA Department of Statistics Columbia University New York NY USA Department of Haematology University of Cambridge Cambridge UK University of Leuven Leuven Belgium Broad Institute of MIT and Harvard Cambridge MA USA Center for Cancer Research Massachusetts General Hospital Charlestown MA USA Department of Pathology Massachusetts General Hospital Boston MA USA Harvard Medical School Boston MA USA Center for Cancer Research Massachusetts General Hospital Boston MA USA Dana-Farber Cancer Institute Boston MA USA Department of Medical Oncology Dana-Farber Cancer Institute Boston MA USA Department of Cancer Biology Dana-Farber Cancer Institute Boston MA USA Oxford NIHR Biomedical Research Centre Oxford UK Oxford NIHR Biomedical Research Centre University of Oxford Oxford UK University of Toronto Toronto Ontario Canada Vector Institute Toronto Ontario Canada Vector Institute Toronto ON Canada Department of Computer Science University of Toronto Toronto ON Canada Ontario Institute for Cancer Research Toronto Ontario Canada University of California Los Angeles

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Author Correction: Genomic footprints of activated telomere maintenance mechanisms in cancer (Dec, 10.1038/s41467-019-13824-9, 2022)

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NATURE COMMUNICATIONS 2022年第1期13卷 1-1页

作者： Sieverling, Lina Hong, Chen Koser, Sandra D. Ginsbach, Philip Kleinheinz, Kortine Hutter, Barbara Braun, Delia M. Cortes-Ciriano, Isidro Xi, Ruibin Kabbe, Rolf Park, Peter J. Eils, Roland Schlesner, Matthias Brors, Benedikt Rippe, Karsten Jones, David T. W. Feuerbach, Lars Division of Applied Bioinformatics German Cancer Research Center (DKFZ) 69120 Heidelberg Germany Faculty of Biosciences Heidelberg University 69120 Heidelberg Germany Division of Applied Bioinformatics German Cancer Research Center (DKFZ) Heidelberg Germany Faculty of Biosciences Heidelberg University Heidelberg Germany Division of Theoretical Bioinformatics German Cancer Research Center (DKFZ) 69120 Heidelberg Germany Department for Bioinformatics and Functional Genomics Institute for Pharmacy and Molecular Biotechnology (IPMB) and BioQuant 69120 Heidelberg Germany Division of Theoretical Bioinformatics German Cancer Research Center (DKFZ) Heidelberg Germany Institute of Pharmacy and Molecular Biotechnology and BioQuant Heidelberg University Heidelberg Germany German Cancer Consortium (DKTK) Heidelberg Germany National Center for Tumor Diseases (NCT) Heidelberg Heidelberg Germany Heidelberg Center for Personalized Oncology (DKFZ-HIPO) German Cancer Research Center (DKFZ) Heidelberg Germany German Cancer Consortium (DKTK) German Cancer Research Center (DKFZ) Heidelberg Germany Division of Chromatin Networks German Cancer Research Center (DKFZ) and BioQuant 69120 Heidelberg Germany Department of Biomedical Informatics Harvard Medical School Boston Massachusetts 02115 USA Department of Chemistry Centre for Molecular Science Informatics University of Cambridge Cambridge CB2 1EW UK Ludwig Center at Harvard Medical School Boston Massachusetts 02115 USA Department of Biomedical Informatics Harvard Medical School Boston MA USA Department of Chemistry Centre for Molecular Science Informatics University of Cambridge Cambridge UK Ludwig Center at Harvard Medical School Boston MA USA School of Mathematical Sciences and Center for Statistical Science Peking University Beijing 100871 China Heidelberg University Heidelberg Germany New BIH Digital Health Center Berlin Institute of Health (BIH) and Charité - Universitätsmedizin Berlin Berlin Germany Bioi

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First Measurement of Antideuteron Number Fluctuations at Energies Available at the Large Hadron Collider

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Physical Review Letters 2023年第4期131卷 041901-041901页

作者： S. Acharya D. Adamová A. Adler G. Aglieri Rinella M. Agnello N. Agrawal Z. Ahammed S. Ahmad S. U. Ahn I. Ahuja A. Akindinov M. Al-Turany D. Aleksandrov B. Alessandro H. M. Alfanda R. Alfaro Molina B. Ali Y. Ali A. Alici N. Alizadehvandchali A. Alkin J. Alme G. Alocco T. Alt I. Altsybeev M. N. Anaam C. Andrei A. Andronic V. Anguelov F. Antinori P. Antonioli C. Anuj N. Apadula L. Aphecetche H. Appelshäuser S. Arcelli R. Arnaldi I. C. Arsene M. Arslandok A. Augustinus R. Averbeck S. Aziz M. D. Azmi A. Badalà Y. W. Baek X. Bai R. Bailhache Y. Bailung R. Bala A. Balbino A. Baldisseri B. Balis D. Banerjee Z. Banoo R. Barbera L. Barioglio M. Barlou G. G. Barnaföldi L. S. Barnby V. Barret L. Barreto C. Bartels K. Barth E. Bartsch F. Baruffaldi N. Bastid S. Basu G. Batigne D. Battistini B. Batyunya D. Bauri J. L. Bazo Alba I. G. Bearden C. Beattie P. Becht D. Behera I. Belikov A. D. C. Bell Hechavarria R. Bellwied S. Belokurova V. Belyaev G. Bencedi S. Beole A. Bercuci Y. Berdnikov A. Berdnikova L. Bergmann M. G. Besoiu L. Betev P. P. Bhaduri A. Bhasin I. R. Bhat M. A. Bhat B. Bhattacharjee L. Bianchi N. Bianchi J. Bielčík J. Bielčíková J. Biernat A. Bilandzic G. Biro S. Biswas J. T. Blair D. Blau M. B. Blidaru N. Bluhme C. Blume G. Boca F. Bock T. Bodova A. Bogdanov S. Boi J. Bok L. Boldizsár A. Bolozdynya M. Bombara P. M. Bond G. Bonomi H. Borel A. Borissov H. Bossi E. Botta L. Bratrud P. Braun-Munzinger M. Bregant M. Broz G. E. Bruno M. D. Buckland D. Budnikov H. Buesching S. Bufalino O. Bugnon P. Buhler Z. Buthelezi J. B. Butt A. Bylinkin S. A. Bysiak M. Cai H. Caines A. Caliva E. Calvo Villar J. M. M. Camacho R. S. Camacho P. Camerini F. D. M. Canedo M. Carabas F. Carnesecchi R. Caron J. Castillo Castellanos F. Catalano C. Ceballos Sanchez I. Chakaberia P. Chakraborty S. Chandra S. Chapeland M. Chartier S. Chattopadhyay T. G. Chavez T. Cheng C. Cheshkov B. Cheynis V. Chibante Barroso D. D. Chinellato E. S. Chizzali S. Cho P. Chochula P. Christakoglou C. H. Christensen P. Christiansen T. Chujo M. Ciacco C. Cicalo L. C Université Clermont Auvergne CNRS/IN2P3 LPC Clermont-Ferrand France Variable Energy Cyclotron Centre Homi Bhabha National Institute Kolkata India Nuclear Physics Institute of the Czech Academy of Sciences Husinec-Řež Czech Republic Johann-Wolfgang-Goethe Universität Frankfurt Institut für Informatik Fachbereich Informatik und Mathematik Frankfurt Germany European Organization for Nuclear Research (CERN) Geneva Switzerland Dipartimento DISAT del Politecnico and Sezione INFN Turin Italy INFN Sezione di Bologna Bologna Italy Department of Physics Aligarh Muslim University Aligarh India Korea Institute of Science and Technology Information Daejeon Republic of Korea Faculty of Science P.J. Šafárik University Košice Slovak Republic Affiliated with an institute covered by a cooperation agreement with CERN Research Division and ExtreMe Matter Institute EMMI GSI Helmholtzzentrum für Schwerionenforschung GmbH Darmstadt Germany INFN Sezione di Torino Turin Italy Central China Normal University Wuhan China Instituto de Física Universidad Nacional Autónoma de México Mexico City Mexico COMSATS University Islamabad Islamabad Pakistan Dipartimento di Fisica e Astronomia dell’Università and Sezione INFN Bologna Italy University of Houston Houston Texas USA Department of Physics and Technology University of Bergen Bergen Norway INFN Sezione di Cagliari Cagliari Italy Institut für Kernphysik Johann Wolfgang Goethe-Universität Frankfurt Frankfurt Germany Horia Hulubei National Institute of Physics and Nuclear Engineering Bucharest Romania Westfälische Wilhelms-Universität Münster Institut für Kernphysik Münster Germany Physikalisches Institut Ruprecht-Karls-Universität Heidelberg Heidelberg Germany INFN Sezione di Padova Padova Italy Lawrence Berkeley National Laboratory Berkeley California USA SUBATECH IMT Atlantique Nantes Université CNRS-IN2P3 Nantes France Department of Physics University of Oslo Oslo Norway Yale University New Haven Connecticut USA L

The first measurement of event-by-event antideuteron number fluctuations in high energy heavy-ion collisions is presented. The measurements are carried out at midrapidity (|η|<0.8) as a function of collision centrality in Pb-Pb collisions at sNN=5.02 TeV using the ALICE detector. A significant negative correlation between the produced antiprotons and antideuterons is observed in all collision centralities. The results are compared with a state-of-the-art coalescence calculation. While it describes the ratio of higher order cumulants of the antideuteron multiplicity distribution, it fails to describe quantitatively the magnitude of the correlation between antiproton and antideuteron production. On the other hand, thermal-statistical model calculations describe all the measured observables within uncertainties only for correlation volumes that are different with respect to those describing proton yields and a similar measurement of net-proton number fluctuations.

关键词： Hadron-hadron interactions

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Commentaries on Viewpoint: Using V̇o2max as a marker of training status in athletes - can we do better?

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Journal of applied physiology (Bethesda, Md. : 1985) 2022年第1期133卷 148-164页

作者： Pedro L Valenzuela Manuel Mateo-March Xabier Muriel Mikel Zabala Alejandro Lucia David Barranco-Gil Grégoire P Millet Franck Brocherie Johannes Burtscher Martin Burtscher Benjamin J Ryan Rachel A Gioscia-Ryan Stephane Perrey Víctor Rodrigo-Carranza Fernando González-Mohíno José María González-Ravé Jordan Santos-Concejero Benedito S Denadai Camila C Greco Arturo Casado Carl Foster Raffaele Mazzolari Giulia Nicole Baldrighi Elisa Pastorio Davide Malatesta Aurélien Patoz Fabio Borrani Stephen J Ives Justin A DeBlauw Ricardo Dantas de Lucas Fernando Klitzke Borszcz Eduardo Marcel Fernandes Nascimento Luiz Guilherme Antonacci Guglielmo Tiago Turnes Richard T Jaspers Stephan van der Zwaard Romuald Lepers Julien Louis Anderson Meireles Hiago L. R. de Souza Géssyca T de Oliveira Marcelo P dos Santos Rhaí A Arriel Moacir Marocolo B Hunter S Meyler D Muniz-Pumares Renato M Ferreira Abigail S Sogard Stephen J Carter Timothy D Mickleborough Guilherme Pereira Saborosa Raphael Dinalli de Oliveira Freitas Paula Souza Alves dos Santos João Pedro de Souza Ferreira Francisco de Assis Manoel Sandro Fernandes da Silva Christoph Triska Bettina Karsten Dajo Sanders Elliot S Lipksi David J Spindler Matthijs K. C. Hesselink Rodrigo Zacca Márcio Fagundes Goethel David Bruce Pyne Brayden M Wood Peyton E Allen Jaden L Gabelhausen Alexandra M Keller Mast T Lige Alicia S Oumsang Greg L Smart Hunter L Paris Arthur H Dewolf Guillaume Toffoli Borja Martinez-Gonzalez Samuele M Marcora Daniela Terson de Paleville Ricardo J Fernandes Susana M Soares J. Arturo Abraldes Guilherme Matta Arthur Henrique Bossi D G McCarthy W Bostad J Gibala Mary Vagula Grupo de Investigación en Actividad física y Salud (PaHerg) Instituto de Investigación Hospital 12 de Octubre (imas12) Madrid Spain Faculty of Sport Sciences Universidad Europea de Madrid Madrid Spain Sport Science Department. Universidad Miguel Hernández Elche Spain Human Performance and Sports Science Laboratory Faculty of Sport Sciences University of Murcia Murcia Spain Department of Physical Education & Sport Faculty of Sport Sciences University of Granada Granada Spain Institute of Sport Sciences University of Lausanne Lausanne Switzerland Laboratory Sport Expertise and Performance (EA 7370) French Institute of Sport (INSEP) Paris France Department of Sport Science University of Innsbruck Innsbruck Austria Thermal and Mountain Medicine Division US Army Research Institute of Environmental Medicine Natick Massachusetts Department of Anesthesiology University of Michigan Ann Arbor Michigan EuroMov Digital Health in Motion University of Montpellier Montpellier France Sport Training Lab University of Castilla-La Mancha Toledo Spain Facultad de Ciencias de la Vida y de la Naturaleza Universidad Nebrija Madrid Spain Department of Physical Education and Sport University of the Basque Country UPV/EHU Vitoria-Gasteiz Spain Human Performance Laboratory São Paulo State University Rio Claro Brazil Center for Sport Studies Rey Juan Carlos University Madrid Spain University of Wisconsin-La Crosse La Crosse Wisconsin Department of Physical Education and Sport University of the Basque Country (UPV/EHU) Vitoria-Gasteiz Spain Department of Molecular Medicine University of Pavia Pavia Italy Department of Brain and Behavioural Sciences − Medical and Genomic Statistics Unit University of Pavia Pavia Italy Department of Biomedical Sciences for Health University of Milan Milan Italy Institute of Sport Sciences of University of Lausanne (ISSUL) University of Lausanne Lausanne Switzerland Health and Human Physiological Sciences Skidmore College Saratoga Springs New

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Genomic basis for RNA alterations in cancer (vol 578, pg 129, 2020)

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NATURE 2023年第7948期614卷 E37-E37页

作者： Calabrese, Claudia Davidson, Natalie R. Demircioglu, Deniz Fonseca, Nuno A. He, Yao Lehmann, Kjong-Van Liu, Fenglin Shiraishi, Yuichi Soulette, Cameron M. Urban, Lara Greger, Liliana Li, Siliang Liu, Dongbing Perry, Marc D. Xiang, Qian Zhang, Fan Zhang, Junjun Bailey, Peter Erkek, Serap Hoadley, Katherine A. Hou, Yong Huska, Matthew R. Kilpinen, Helena Korbel, Jan O. Marin, Maximillian G. Markowski, Julia Nandi, Tannistha Pan-Hammarstrom, Qiang Pedamallu, Chandra Sekhar Siebert, Reiner Stark, Stefan G. Su, Hong Tan, Patrick Waszak, Sebastian M. Yung, Christina Zhu, Shida Awadalla, Philip Creighton, Chad J. Meyerson, Matthew Ouellette, B. F. Francis Wu, Kui Yang, Huanming Brazma, Alvis Brooks, Angela N. Goke, Jonathan Ratsch, Gunnar Schwarz, Roland F. Stegle, Oliver Zhang, Zemin European Molecular Biology Laboratory European Bioinformatics Institute Hinxton UK European Molecular Biology Laboratory European Bioinformatics Institute (EMBL-EBI) Cambridge UK Genome Biology Unit European Molecular Biology Laboratory (EMBL) Heidelberg Germany CIBIO/InBIO - Research Center in Biodiversity and Genetic Resources Universidade do Porto Vairão Portugal Berlin Institute for Medical Systems Biology Max Delbruck Center for Molecular Medicine Berlin Germany German Cancer Consortium (DKTK) partner site Berlin Germany German Cancer Research Center (DKFZ) Heidelberg Germany Berlin Institute for Medical Systems Biology Max Delbrück Center for Molecular Medicine Berlin Germany German Cancer Consortium (DKTK) Partner site Berlin Berlin Germany European Molecular Biology Laboratory Genome Biology Unit Heidelberg Germany Division of Computational Genomics and Systems Genetics German Cancer Research Center (DKFZ) Heidelberg Germany ETH Zurich Zurich Switzerland Memorial Sloan Kettering Cancer Center New York NY USA Weill Cornell Medical College New York NY USA SIB Swiss Institute of Bioinformatics Lausanne Switzerland University Hospital Zurich Zurich Switzerland Computational Biology Center Memorial Sloan Kettering Cancer Center New York NY USA Department of Biology ETH Zurich Zürich Switzerland Department of Computer Science ETH Zurich Zurich Switzerland Korea University Seoul South Korea Computational and Systems Biology Program Memorial Sloan Kettering Cancer Center New York NY USA Department of Physiology and Biophysics Weill Cornell Medicine New York NY USA Institute for Computational Biomedicine Weill Cornell Medicine New York NY USA Controlled Department and Institution New York NY USA Englander Institute for Precision Medicine Weill Cornell Medicine New York NY USA National University of Singapore Singapore Singapore Genome Institute of Singapore Singapore Singapore Computational and Systems Biology Genome Institute of Singap

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