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arXiv 2024年

作者： Tan, Rong-Xi Xue, Ke Lyu, Shen-Huan Shang, Haopu Wang, Yao Wang, Yaoyuan Fu, Sheng Qian, Chao National Key Laboratory for Novel Software Technology Nanjing University China School of Artificial Intelligence Nanjing University China Key Laboratory of Water Big Data Technology of Ministry of Water Resources Hohai University China College of Computer Science and Software Engineering Hohai University China Huawei Technologies Ltd. China

Offline model-based optimization (MBO) aims to identify a design that maximizes a black-box function using only a fixed, pre-collected dataset of designs and their corresponding scores. This problem has garnered significant attention from both scientific and industrial domains. A common approach in offline MBO is to train a regression-based surrogate model by minimizing mean squared error (MSE) and then find the best design within this surrogate model by different optimizers (e.g., gradient ascent). However, a critical challenge is the risk of out-of-distribution errors, i.e., the surrogate model may typically overestimate the scores and mislead the optimizers into suboptimal regions. Prior works have attempted to address this issue in various ways, such as using regularization techniques and ensemble learning to enhance the robustness of the model, but it still remains. In this paper, we argue that regression models trained with MSE are not well-aligned with the primary goal of offline MBO, which is to select promising designs rather than to predict their scores precisely. Notably, if a surrogate model can maintain the order of candidate designs based on their relative score relationships, it can produce the best designs even without precise predictions. To validate it, we conduct experiments to compare the relationship between the quality of the final designs and MSE, finding that the correlation is really very weak. In contrast, a metric that measures order-maintaining quality shows a significantly stronger correlation. Based on this observation, we propose learning a ranking-based model that leverages learning to rank techniques to prioritize promising designs based on their relative scores. We show that the generalization error on ranking loss can be well bounded. Empirical results across diverse tasks demonstrate the superior performance of our proposed ranking-based models than twenty existing methods. Copyright © 2024, The Authors. All rights reserved.

关键词： Contrastive Learning

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LightM-UNet: Mamba Assists in Lightweight UNet for Medical Image Segmentation

arXiv

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arXiv 2024年

作者： Liao, Weibin Zhu, Yinghao Wang, Xinyuan Pan, Chengwei Wang, Yasha Ma, Liantao Key Laboratory of High Confidence Software Technologies Ministry of Education Beijing China National Engineering Research Center for Software Engineering Peking University Beijing China School of Computer Science Peking University Beijing China Institute of Artificial Intelligence Beihang University Beijing China

UNet and its variants have been widely used in medical image segmentation. However, these models, especially those based on Transformer architectures, pose challenges due to their large number of parameters and computational loads, making them unsuitable for mobile health applications. Recently, State Space Models (SSMs), exemplified by Mamba, have emerged as competitive alternatives to CNN and Transformer architectures. Building upon this, we employ Mamba as a lightweight substitute for CNN and Transformer within UNet, aiming at tackling challenges stemming from computational resource limitations in real medical settings. To this end, we introduce the Lightweight Mamba UNet (LightM-UNet) that integrates Mamba and UNet in a lightweight framework. Specifically, LightM-UNet leverages the Residual Vision Mamba Layer in a pure Mamba fashion to extract deep semantic features and model long-range spatial dependencies, with linear computational complexity. Extensive experiments conducted on two real-world 2D/3D datasets demonstrate that LightM-UNet surpasses existing state-of-the-art literature. Notably, when compared to the renowned nnU-Net, LightM-UNet achieves superior segmentation performance while drastically reducing parameter and computation costs by 116x and 21x, respectively. This highlights the potential of Mamba in facilitating model lightweighting. Our code implementation is publicly available at https://***/MrBlankness/LightM-UNet Copyright © 2024, The Authors. All rights reserved.

关键词： Semantics

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Bootstrapping-Based Automatic Acquisition of Domain Concepts for Ontology Construction

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Chinese Journal of Electronics 2023年第2期22卷 313-318页

作者： Yuehua Yang Junping Du Lingling Zi Beijing Key Laboratory of Intelligent Telecommunication Software and Multimedia School of Computer Science Beijing University of Posts and Telecommunications Beijing China School of Electronic and Information Engineering Liaoning Technical University Huludao China

The domain concept is one of the key elements of ontology. In order to automatically acquire the domain concepts during the domain ontology construction, we proposed a novel Bootstrapping-based automatic acquisition algorithm of domain concepts. In our work, the compound words are extracted according to the combination conditions of the mutual information and the information entropy. The candidate domain concepts determinant conditions based on the co-occurrence sentences frequency are presented. Besides, to avoid omitting the domain concepts with the lower frequency or semantically similar to other domain concepts, the semantic factor is introduced. The experiments results have demonstrated that the compound domain concepts and the semantically similar domain concepts with the lower sentences frequency can also be extracted by using the proposed algorithm. And the proposed algorithm has obtained higher precision and recall, so it is effective and feasible.

关键词： Frequency-domain analysis Semantics Focusing Ontologies Filtering algorithms Compounds Data mining

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Sparsity Aware of TF-IDF Matrix to Accelerate Oblivious Document Ranking and Retrieval

Sparsity Aware of TF-IDF Matrix to Accelerate Oblivious Docu...

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IEEE International Conference on Trust, Security and Privacy in Computing and Communications (TrustCom)

作者： Zeshi Zhang Guangping Xu Hongzhang Yang Yulei Wu School of Computer Science and Engineering Tianjin University of Technology Tianjin China Tianjin Key Laboratory of Intelligence Computing and Novel Software Technology Tianjin China Ministry of Education Key Laboratory of Computer Vision and System China Faculty of Engineering University of Bristol Bristol U.K.

ISBN: (数字)9798350381993

ISBN: (纸本)9798350382006

Due to cloud security concerns, there is an increasing interest in information retrieval systems that can support private queries over public documents. It is desirable for oblivious document ranking and retrieval in public cloud at lower cost and faster speed without revealing query-related information. Currently, the term frequency-inverse document frequency (TF-IDF) and private information retrieval (PIR) techniques are used to solve this problem, but the encryption operation time is over dominant. Motivated by the observation of the sparsity of the TF-IDF matrix, we propose an efficient approach for oblivious document ranking and retrieval, called E-Coeus. It takes advantage of the high sparsity of the TF-IDF matrix to rearrange the matrix. Our method accelerates the speed of PIR inadvertently retrieving documents and reduces the user retrieval delay time. In a stand-alone experiment for a TF-IDF matrix of 1.2M rows and 64K columns with the sparsity of 10%, E-Coeus improves the document ranking and retrieval performance by 23% over the state-of-the-art approach, Coeus. With cluster of 64 machines, E-Coeus improves the performance by 34% over Coeus when the TF-IDF matrix sparsity is 30%.

关键词： Time-frequency analysis Privacy Costs Cloud computing security Information retrieval Encryption Delays

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CA-Edit: Causality-Aware Condition Adapter for High-Fidelity Local Facial Attribute Editing

arXiv

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arXiv 2024年

作者： Xian, Xiaole He, Xilin Niu, Zenghao Zhang, Junliang Xie, Weicheng Song, Siyang Yu, Zitong Shen, Linlin Computer Vision Institute School of Computer Science & Software Engineering Shenzhen University China National Engineering Laboratory for Big Data System Computing Technology Shenzhen University China Guangdong Key Laboratory of Intelligent Information Processing China University of Exeter United Kingdom Great Bay University China

For efficient and high-fidelity local facial attribute editing, most existing editing methods either require additional finetuning for different editing effects or tend to affect beyond the editing regions. Alternatively, inpainting methods can edit the target image region while preserving external areas. However, current inpainting methods still suffer from the generation misalignment with facial attributes description and the loss of facial skin details. To address these challenges, (i) a novel data utilization strategy is introduced to construct datasets consisting of attribute-text-image triples from a data-driven perspective, (ii) a Causality-Aware Condition Adapter is proposed to enhance the contextual causality modeling of specific details, which encodes the skin details from the original image while preventing conflicts between these cues and textual conditions. In addition, a Skin Transition Frequency Guidance technique is introduced for the local modeling of contextual causality via sampling guidance driven by low-frequency alignment. Extensive quantitative and qualitative experiments demonstrate the effectiveness of our method in boosting both fidelity and editability for localized attribute editing. The code is available at https://***/connorxian/CA-Edit. © 2024, CC BY.

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DAMPER: A Dual-Stage Medical Report Generation Framework with Coarse-Grained MeSH Alignment and Fine-Grained Hypergraph Matching

arXiv

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arXiv 2024年

作者： Huang, Xiaofei Chen, Wenting Liu, Jie Lu, Qisheng Luo, Xiaoling Shen, Linlin Computer Vision Institute College of Computer Science and Software Engineering Shenzhen University Shenzhen China Department of Electrical Engineering City University of Hong Kong Kowloon Hong Kong National Engineering Laboratory for Big Data System Computing Technology Shenzhen University China Guangdong Provincial Key Laboratory of Intelligent Information Processing China

Medical report generation is crucial for clinical diagnosis and patient management, summarizing diagnoses and recommendations based on medical imaging. However, existing work often overlook the clinical pipeline involved in report writing, where physicians typically conduct an initial quick review followed by a detailed examination. Moreover, current alignment methods may lead to misaligned relationships. To address these issues, we propose DAMPER, a dual-stage framework for medical report generation that mimics the clinical pipeline of report writing in two stages. In the first stage, a MeSH-Guided Coarse-Grained Alignment (MCG) stage that aligns chest X-ray (CXR) image features with medical subject headings (MeSH) features to generate a rough keyphrase representation of the overall impression. In the second stage, a Hypergraph-Enhanced Fine-Grained Alignment (HFG) stage that constructs hypergraphs for image patches and report annotations, modeling high-order relationships within each modality and performing hypergraph matching to capture semantic correlations between image regions and textual phrases. Finally,the coarse-grained visual features, generated MeSH representations, and visual hypergraph features are fed into a report decoder to produce the final medical report. Extensive experiments on public datasets demonstrate the effectiveness of DAMPER in generating comprehensive and accurate medical reports, outperforming state-of-the-art methods across various evaluation metrics. Copyright © 2024, The Authors. All rights reserved.

关键词： Coarse-grained modeling

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Source-Free Domain Adaptation for Millimeter Wave Radar Based Human Activity Recognition

Source-Free Domain Adaptation for Millimeter Wave Radar Base...

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International Conference on Acoustics, Speech, and Signal Processing (ICASSP)

作者： Jin Liu Dejiao Zeng Ludi Li Hanhe Lin Xu Tian Hunan Provincial Key Laboratory on Bioinformatics School of Computer Science and Engineering Central South University Changsha China School of Software Xinjiang University Urumqi China School of Science and Engineering University of Dundee United Kingdom

Human activity recognition based on millimeter-wave radar is dedicated to monitor people’s daily activities and detect specific dangerous actions. Although existing methods achieve some improvement, they rarely consider the challenges of domain difference, such as ages and environments. To address this challenge, we propose a source-free domain adaptation method for millimeter wave radar based human activity recognition, which achieves knowledge transfer from the source domain to the target domain. Firstly, we propose balanced clustering to obtain cluster centers of source domain as the prior-knowledge through the pre-trained model. Then, in order to perform domain adaptation, the model is fine-tuned by the integration of domain adaptation and self-supervision of the target domain. Experiment results on several transfer tasks show that our proposed method is effective in human activity recognition and outperforms some other advanced transfer learning methods.

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Bi-Causal: Group Activity Recognition via Bidirectional Causality

Bi-Causal: Group Activity Recognition via Bidirectional Caus...

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Conference on computer Vision and Pattern Recognition (CVPR)

作者： Youliang Zhang Wenxuan Liu Danni Xu Zhuo Zhou Zheng Wang National Engineering Research Center for Multimedia Software Institute of Artificial Intelligence School of Computer Science Wuhan University Hubei Key Laboratory of Multimedia and Network Communication Engineering Wuhan University of Technology National University of Singapore

ISBN: (数字)9798350353006

ISBN: (纸本)9798350353013

Current approaches in Group Activity Recognition (GAR) predominantly emphasize Human Relations (HRs) while often neglecting the impact of Human-Object Inter-actions (HOIs). This study prioritizes the consideration of both HRs and HOIs, emphasizing their interdependence. Notably, employing Granger Causality Tests reveals the presence of bidirectional causality between HRs and HOIs. Leveraging this insight, we propose a Bidirectional-Causal GAR network. This network establishes a causality commu-nication channel while modeling relations and interactions, enabling reciprocal enhancement between human-object interactions and human relations, ensuring their mutual consistency. Additionally, an Interaction Module is devised to effectively capture the dynamic nature of human-object interactions. Comprehensive experiments conducted on two publicly available datasets showcase the superiority of our proposed method over state-of-the-art approaches. Our project page: https://***/***/

关键词： computer vision Computational modeling Cause effect analysis Communication channels Activity recognition

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CIXG: A Comprehensive Approach to Driver Gene Identification and Causal Interpretation

CIXG: A Comprehensive Approach to Driver Gene Identification...

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IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

作者： Yawen Liu Yiwen Chen Shanling Nie Hai Yang Department of Computer Science and Engineering East China University of Science and Technology Shanghai China Shanghai Key Laboratory of Computer Software Evaluating and Testing Shanghai China Center for Continuing and Lifelong Education National University of Singapore Faculty of Engineering The University of Sydney Australia

ISBN: (数字)9798350386226

ISBN: (纸本)9798350386233

With the ongoing advancements in science and technology and the increasing research focus on cancer-related issues, there has been a proliferation of omics-related resources for in-depth analysis and exploration. This burgeoning volume and complexity of biological data have fostered the integration of machine-learning techniques into biology. As a result, numerous machine-learning strategies have been established to identify driver mutations. Yet, many of these strategies produce complex models, complicating comprehension and thereby clouding the impact of input features on the resulting predictions. Our analysis presented the CIXG framework, which integrates a driver gene prediction module using XGBoost with a causality interpretation module anchored on CXPlain. This architecture enables quantifying each input feature’s contribution to the prediction outcome and ensures precise predictions of driver genes. When benchmarked against the state-of-the-art (SOTA) method, CIXG demonstrated superior accuracy in pinpointing driver genes across pan-cancer studies and within the 32 specific cancer types. Importantly, our results underscored that mutation features chiefly influence CIXG’s predictive prowess, with additional support from other omics features.

关键词： Accuracy Biological system modeling Cause effect analysis Machine learning Predictive models Benchmark testing Complexity theory Bioinformatics Cancer

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Learnable Prompt as Pseudo-Imputation: Rethinking the Necessity of Traditional EHR Data Imputation in Downstream Clinical Prediction

arXiv

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arXiv 2024年

作者： Liao, Weibin Zhu, Yinghao Zhang, Zhongji Wang, Yuhang Wang, Zixiang Chu, Xu Wang, Yasha Ma, Liantao Peking University School of Computer Science Beijing China Ministry of Education Key Laboratory of High Confidence Software Technologies Beijing China Peking University National Engineering Research Center for Software Engineering Beijing China Peking University School of Software and Microelectronics Beijing China Peking University School of Computer Science Center on Frontiers of Computing Studies Beijing China Tianjin China

Analyzing the health status of patients based on Electronic Health Records (EHR) is a fundamental research problem in medical informatics. The presence of extensive missing values in EHR makes it challenging for deep neural networks (DNNs) to directly model the patient’s health status. Existing DNNs training protocols, including Impute-then-Regress Procedure and Jointly Optimizing of Impute-n-Regress Procedure, require the additional imputation models to reconstruction missing values. However, Impute-then-Regress Procedure introduces the risk of injecting imputed, non-real data into downstream clinical prediction tasks, resulting in power loss, biased estimation, and poorly performing models, while Jointly Optimizing of Impute-n-Regress Procedure is also difficult to generalize due to the complex optimization space and demanding data requirements. Inspired by the recent advanced literature of learnable prompt in the fields of NLP and CV, in this work, we rethought the necessity of the imputation model in downstream clinical tasks, and proposed Learnable Prompt as Pseudo-Imputation (PAI) as a new training protocol to assist EHR analysis. PAI no longer introduces any imputed data but constructs a learnable prompt to model the implicit preferences of the downstream model for missing values, resulting in a significant performance improvement for all state-of-the-arts EHR analysis models on four real-world datasets across two clinical prediction tasks. Further experimental analysis indicates that PAI exhibits higher robustness in situations of data insufficiency and high missing rates. More importantly, as a plug-and-play protocol, PAI can be easily integrated into any existing or even imperceptible future EHR analysis models. The code of this work is deployed publicly available at https://***/MrBlankness/PAI to help the research community reproduce the results and assist the EHR analysis tasks. Copyright © 2024, The Authors. All rights reserved.

关键词： Electronic health record

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