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Proceedings of the 38th International Conference on Neural information processing Systems

作者： Jiadong Pan Hongcheng Gao Zongyu Wu Taihang Hu Li Su Qingming Huang Liang Li Key Laboratory of Intelligent Information Processing Institute of Computing Technology CAS and University of Chinese Academy of Sciences University of Chinese Academy of Sciences The Pennsylvania State University Nankai University Key Laboratory of Intelligent Information Processing Institute of Computing Technology CAS

ISBN: (纸本)9798331314385

Diffusion models (DMs) have demonstrated remarkable proficiency in producing images based on textual prompts. Numerous methods have been proposed to ensure these models generate safe images. Early methods attempt to incorporate safety filters into models to mitigate the risk of generating harmful images but such external filters do not inherently detoxify the model and can be easily bypassed. Hence, model unlearning and data cleaning are the most essential methods for maintaining the safety of models, given their impact on model parameters. However, malicious fine-tuning can still make models prone to generating harmful or undesirable images even with these methods. Inspired by the phenomenon of catastrophic forgetting, we propose a training policy using contrastive learning to increase the latent space distance between clean and harmful data distribution, thereby protecting models from being fine-tuned to generate harmful images due to forgetting. The experimental results demonstrate that our methods not only maintain clean image generation capabilities before malicious fine-tuning but also effectively prevent DMs from producing harmful images after malicious fine-tuning. Our method can also be combined with other safety methods to maintain their safety against malicious fine-tuning further.

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DMSS:An Attention-Based Deep Learning Model for High-Quality Mass Spectrometry Prediction

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Big Data Mining and Analytics 2024年第3期7卷 577-589页

作者： Yihui Ren Yu Wang Wenkai Han Yikang Huang Xiaoyang Hou Chunming Zhang Dongbo Bu Xin Gao Shiwei Sun Key Lab of Intelligent Information Processing Institute of Computing TechnologyChinese Academy of SciencesBeijing 100190Chinaand with University of Chinese Academy of SciencesBeijing 100049China Syneron Technology Guangzhou 510000China College of Information and Electrical Engineering China Agricultural UniversityBeijing 100083China Computer Science Program ComputerElectrical and Mathematical Sciences and Engineering DivisionKing Abdullah University of Science and Technology(KAUST)Thuwal 23955-6900Kingdom of Saudi Arabia Insitute of Computing Technology Chinese Academy of SciencesBeijing 100190China with Western Institute of Computing Technology Chongqing 400000China

Accurate prediction of peptide spectra is crucial for improving the efficiency and reliability of proteomic analysis,as well as for gaining insight into various biological *** this study,we introduce Deep MS Simulator(DMSS),a novel attention-based model tailored for forecasting theoretical spectra in mass *** has undergone rigorous validation through a series of experiments,consistently demonstrating superior performance compared to current methods in forecasting theoretical *** superior ability of DMSS to distinguish extremely similar peptides highlights the potential application of incorporating our predicted intensity information into mass spectrometry search engines to enhance the accuracy of protein *** findings contribute to the advancement of proteomics analysis and highlight the potential of the DMSS as a valuable tool in the field.

关键词： mass spectrometry proteomics machine learning deep learning

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Scattering Characteristics-guided Self-supervised Learning for Target Classification in SAR Images 24

Scattering Characteristics-guided Self-supervised Learning f...

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7th International Conference on Image and Graphics processing, ICIGP 2024

作者： Zhong, Honghu Li, Jianhao Shi, Hao Fang, Zhonghao Chen, Liang Institute of Radar Technology Beijing Institute of Technology Beijing China National Key Laboratory of Science and Technology on Space-Born Intelligent Information Processing China Innovation Center of Beijing Institute of Technology Chongqing Chongqing401120 China

ISBN: (纸本)9798400716720

With the advancement of science and technology, the spatial resolution of spaceborne Synthetic Aperture Radar (SAR) images has achieved sub-meter precision, enabling the classification and identification of targets. Notably, the rapid and accurate classification of aircraft targets using SAR images has become a significant application requirement. Nevertheless, challenges persist in the classification of targets within aircraft remote sensing images. This paper introduces a novel method aimed at enhancing the scattering characteristics in SAR images to address issues associated with discrete imaging pixels, strong scattering characteristics, and the consequent difficulty in distinguishing aircraft features. The proposed method systematically correlates the discrete SAR image scattering characteristics, thereby facilitating the extraction of characteristic information pertaining to the edge contours of aircraft targets. Recognizing the limitations of traditional supervised classification methods, which often demand substantial manually labeled information, this study integrates self-supervised contrastive learning to mitigate labeling costs. Additionally, acknowledging the imbalanced distribution of samples across different categories and the prevalent "long tail"effect, a weighted loss function is introduced to rectify the imbalance and enhance the network's focus on the learning of underrepresented samples. The efficacy of the proposed method is evaluated using a self-established dataset. The results demonstrate a 1.48% increase in accuracy compared to the original self-supervised method, indicating an improvement in the classification performance for categories characterized by an imbalanced sample distribution. © 2024 ACM.

关键词： Image classification

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Evolutionary Multi-Objective Neural Architecture Search for Generalized Cognitive Diagnosis Models 5

Evolutionary Multi-Objective Neural Architecture Search for ...

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5th International Conference on Data-Driven Optimization of Complex Systems, DOCS 2023

作者： Yang, Shangshang Zhen, Cheng Tian, Ye Ma, Haiping Liu, Yuanchao Zhang, Panpan Zhang, Xingyi School of Artificial Intelligence Anhui University Key Laboratory of Intelligent Computing and Signal Processing Ministry of Education Hefei China Institutes of Physical Science and Information Technology Anhui University Key Laboratory of Intelligent Computing and Signal Processing Ministry of Education Hefei China Automation for Process Industries Northeastern University State Key Laboratory of Synthetical Shenyang China

ISBN: (纸本)9798350393521

Cognitive diagnosis models (CDMs) with high generalization are essential for intelligent education systems to reveal students' knowledge states in multiple datasets. However, existing CDMs' architectures are designed dependent on researcher expertise and experience from observing and summarizing partial students' learning behaviors, which makes handcrafted models not cover all learning behaviors well and thus limits their generalization. To develop generalized CDMs, this paper proposes an evolutionary neural architecture search to design CDMs' architectures effective on multiple datasets automatically. Specifically, we first formulate the search task as a multi-objective optimization problem (MOP), which maximizes model performance on multiple datasets containing learning behaviors as many as possible to ensure model generalization. Then, an expressive search space is devised to contain as many potential architectures as possible, where each architecture is denoted by a unified form, taking three given inputs and integrating them in a linear or no-linear manner for prediction. Finally, an evolutionary algorithm with a tailored deduplication strategy is employed to solve the MOP, where each architecture is further represented by a single-root computation tree for easy optimization. Experiments on multiple datasets demonstrate the generalization and effectiveness of the best architecture searched by the proposed approach, and the searched architecture also holds as good interpretability as handcrafted architectures. © 2023 IEEE.

关键词： Multiobjective optimization

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Imperceptible and Sparse Adversarial Attacks via a Dual-Population-Based Constrained Evolutionary Algorithm

IEEE Transactions on Artificial Intelligence

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IEEE Transactions on Artificial Intelligence 2023年第2期4卷 268-281页

作者： Tian, Ye Pan, Jingwen Yang, Shangshang Zhang, Xingyi He, Shuping Jin, Yaochu Anhui University Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education Institutes of Physical Science and Information Technology Hefei230601 China Hefei Comprehensive National Science Center Institute of Artificial Intelligence Hefei230088 China Anhui University School of Computer Science and Technology Hefei230601 China Anhui University Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education School of Artificial Intelligence Hefei230601 China Anhui University Anhui Engineering Laboratory of Human-Robot Integration System and Intelligent Equipment School of Electrical Engineering and Automation Hefei230601 China Bielefeld University Faculty of Technology Bielefeld33619 Germany

The sparse adversarial attack has attracted increasing attention due to the merit of a low attack cost via changing a small number of pixels. However, the generated adversarial examples are easily detected in vision since the perturbation to each pixel is relatively large. To achieve imperceptible and sparse adversarial attacks, this article formulates a bi-objective constrained optimization problem, simultaneously minimizing the 0 and 2 distances to the original image, and proposes a dual-population-based constrained evolutionary algorithm to solve it. The proposed method solves the optimization problem by evolving two populations, where one population is responsible for finding feasible solutions (i.e., successful attacks) and the other one is to minimize both the 0 and 2 distances. Moreover, a population initialization strategy and two genetic operators are customized to accelerate the convergence speed. Experimental results indicate that the proposed method can achieve high success rates with low attack costs, and strikes a better balance between the 0 and 2 distances than state-of-the-art methods. © 2020 IEEE.

关键词： Evolutionary algorithms

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A Cross-Domain Ontology Semantic Representation Based on NCBI-BlueBERT Embedding

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Chinese Journal of Electronics 2022年第5期31卷 860-869页

作者： ZHAO Lingling WANG Junjie WANG Chunyu GUO Maozu Faculty of Computing Harbin Institute of Technology Department of Medical Informatics School of Biomedical Engineering and InformaticsNanjing Medical University Beijing Key Laboratory of Intelligent Processing for Building Big Data School of Electrical and Information Engineering Beijing University of Civil Engineering and Architecture

A common but critical task in biological ontologies data analysis is to compare the difference between ontologies. There have been numerous ontologybased semantic-similarity measures proposed in specific ontology domain, but it still remains a challenge for crossdomain ontologies comparison. An ontology contains the scientific natural language description for the corresponding biological aspect. Therefore, we develop a new method based on natural language processing(NLP) representation model bidirectional encoder representations from transformers(BERT) for cross-domain semantic representation of biological ontologies. This article uses the BERT model to represent the word-level of the ontologies as a set of vectors, facilitating the semantic analysis or comparing the biomedical entities named in an ontology or associated with ontology terms. We evaluated the ability of our method in two experiments: calculating similarities of pair-wise disease ontology and human phenotype ontology terms and predicting the pair-wise of proteins interaction. The experimental results demonstrated the comparative performance. This gives promise to the development of NLP methods in biological data analysis.

关键词： human phenotype ontology cross-domain semantic representation natural language description pair-wise disease ontology data analysis bidirectional encoder representations NLP protein interaction diseases proteins natural language processing ontologies (artificial intelligence) natural language processing representation neural nets bioinformatics semantic-similarity measures cross-domain ontology semantic representation semantic analysis NCBI-BlueBERT embedding biological ontology data analysis

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AUCSeg: AUC-oriented Pixel-level Long-tail Semantic Segmentation 38

AUCSeg: AUC-oriented Pixel-level Long-tail Semantic Segmenta...

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38th Conference on Neural information processing Systems, NeurIPS 2024

作者： Han, Boyu Xu, Qianqian Yang, Zhiyong Bao, Shilong Wen, Peisong Jiang, Yangbangyan Huang, Qingming Key Lab. of Intelligent Information Processing Institute of Computing Technology CAS China School of Computer Science and Tech. University of Chinese Academy of Sciences China Peng Cheng Laboratory China Key Laboratory of Big Data Mining and Knowledge Management CAS China

The Area Under the ROC Curve (AUC) is a well-known metric for evaluating instance-level long-tail learning problems. In the past two decades, many AUC optimization methods have been proposed to improve model performance under long-tail distributions. In this paper, we explore AUC optimization methods in the context of pixel-level long-tail semantic segmentation, a much more complicated scenario. This task introduces two major challenges for AUC optimization techniques. On one hand, AUC optimization in a pixel-level task involves complex coupling across loss terms, with structured inner-image and pairwise inter-image dependencies, complicating theoretical analysis. On the other hand, we find that mini-batch estimation of AUC loss in this case requires a larger batch size, resulting in an unaffordable space complexity. To address these issues, we develop a pixel-level AUC loss function and conduct a dependency-graph-based theoretical analysis of the algorithm's generalization ability. Additionally, we design a Tail-Classes Memory Bank (T-Memory Bank) to manage the significant memory demand. Finally, comprehensive experiments across various benchmarks confirm the effectiveness of our proposed AUCSeg method. The code is available at https://***/boyuh/AUCSeg. © 2024 Neural information processing systems foundation. All rights reserved.

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REVISITING GRAPH ADVERSARIAL ATTACK AND DEFENSE FROM A DATA DISTRIBUTION PERSPECTIVE 11

REVISITING GRAPH ADVERSARIAL ATTACK AND DEFENSE FROM A DATA ...

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11th International Conference on Learning Representations, ICLR 2023

作者： Li, Kuan Liu, Yang Ao, Xiang He, Qing Key Lab of Intelligent Information Processing of Chinese Academy of Sciences Institute of Computing Technology Chinese Academy of Sciences University of Chinese Academy of Sciences China

Recent studies have shown that structural perturbations are significantly effective in degrading the accuracy of Graph Neural Networks (GNNs) in the semi-supervised node classification (SSNC) task. However, the reasons for the destructive nature of gradient-based methods have not been explored in-depth. In this work, we discover an interesting phenomenon: the adversarial edges are not uniformly distributed on the graph, and a majority of perturbations are generated around the training nodes in poisoning attacks. Combined with this phenomenon, we provide an explanation for the effectiveness of the gradient-based attack method from a data distribution perspective and revisit both poisoning attack and evasion attack in SSNC. From this new perspective, we empirically and theoretically discuss some other attack tendencies. Based on the analysis, we provide nine practical tips on both attack and defense and meanwhile leverage them to improve existing attack and defense methods. Moreover, we design a fast attack method and a self-training defense method, which outperform the state-of-the-art methods and can effectively scale to large graphs like ogbn-arxiv. We validate our claims through extensive experiments on four benchmark datasets. © 2023 11th International Conference on Learning Representations, ICLR 2023. All rights reserved.

关键词： Graph neural networks

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Learned Fingerprint Embedding for Large-Scale Peptide Mass Spectra Retrieval

Learned Fingerprint Embedding for Large-Scale Peptide Mass S...

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2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023

作者： Wang, Yongshuai Cai, Xiaojun Li, Defeng Sun, Shiwei Chen, Cheng Cui, Xuefeng Shandong University School of Computer Science and Technology Qingdao China Chinese Academy of Sciences Key Lab of Intelligent Information Processing Institute of Computing Technology Beijing China

ISBN: (纸本)9798350337488

Tandem mass spectrometry (MS/MS) is a widely used technique for protein identification, post-translational modifications, immunotherapy, and other applications. As the amount of MS/MS spectra data increases, new computational methods are needed to efficiently search through these databases. This study introduces MS2VEC, a novel fingerprint embedding model designed to facilitate large-scale retrieval of peptide mass spectra. MS2VEC captures the relationships between distant peaks and incorporates position-aware fingerprint features from all peaks. To do this, dilated convolutions are used to capture remote relationships, and a novel position-aware multi-head attention pooling mechanism is used to abstract fingerprint features. The results demonstrate that MS2VEC achieves a top-1 retrieval accuracy of 0.810, outperforming existing methods by 5.1%. Interestingly, the precursor charge is not essential for the retrieval task, as the spectra itself contains enough information to accurately predict the charge. Additionally, the results suggest that weight-balanced fragment ions and water losses are important contributors to fingerprint features. © 2023 IEEE.

关键词： deep learning embedding information retrieval peptide mass spectra tandem mass spectrometry

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Multi-layer network embedding on scc-based network with motif

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Digital Communications and Networks 2024年第3期10卷 546-556页

作者： Lu Sun Xiaona Li Mingyue Zhang Liangtian Wan Yun Lin Xianpeng Wang Gang Xu Department of Communication Engineering Institute of Information Science TechnologyDalian Maritime UniversityDalian116026China Key Laboratory of Big Data Intelligent Computing Chongqing University of Posts and TelecommunicationsChongqing400065China Key Laboratory for Ubiquitous Network and Service Software of Liaoning Province DUT School of Software Technology&DUT-RU International School of Information Science and EngineeringDalian University of TechnologyDalian 116620China College of Information and Communication Engineering Harbin Engineering UniversityHarbin 150001China School of Information and Communication Engineering Hainan UniversityHaikou 570228China State Key Laboratory of Millimeter Waves School of Information Science and EngineeringSoutheast UniversityNanjing 210096China

Interconnection of all things challenges the traditional communication methods,and Semantic Communication and computing(SCC)will become new *** is a challenging task to accurately detect,extract,and represent semantic information in the research of SCC-based *** previous research,researchers usually use convolution to extract the feature information of a graph and perform the corresponding task of node ***,the content of semantic information is quite *** graph convolutional neural networks provide an effective solution for node classification tasks,due to their limitations in representing multiple relational patterns and not recognizing and analyzing higher-order local structures,the extracted feature information is subject to varying degrees of ***,this paper extends from a single-layer topology network to a multi-layer heterogeneous topology *** Bidirectional Encoder Representations from Transformers(BERT)training word vector is introduced to extract the semantic features in the network,and the existing graph neural network is improved by combining the higher-order local feature module of the network model representation network.A multi-layer network embedding algorithm on SCC-based networks with motifs is proposed to complete the task of end-to-end node *** verify the effectiveness of the algorithm on a real multi-layer heterogeneous network.

关键词： Semantic communication and computing Multi-layer network Graph neural network Motif

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