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2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023

作者： Qiu, Yanlong Wang, Siqi Yang, Xi Qiu, Xinyuan Wu, Chengkun Cui, Yingbo Yang, Canqun National University of Defense Technology Institute for Quantum Information State Key Laboratory of High-Performance Computing College of Computer Science Hunan Changsha410073 China National Supercomputer Center in Tianjin Tianjin300457 China National University of Defense Technology National Key Laboratory of Parallel and Distributed Computing College of Computer Science Hunan Changsha410073 China National University of Defense Technology Department of Biology and Chemistry College of Science Hunan Changsha410073 China

ISBN: (纸本)9798350337488

With the exponential growth of biomedical knowledge in unstructured text repositories such as PubMed, it is imminent to establish a knowledge graph-style, efficient searchable and targeted database that can support the need of information retrieval from researchers and clinicians. To mine knowledge from graph databases, most previous methods view a triple in a graph (see Fig. 1) as the basic processing unit and embed the triplet element (i.e. drugs/chemicals, proteins/genes and their interaction) as separated embedding matrices, which cannot capture the semantic correlation among triple elements. To remedy the loss of semantic correlation caused by disjoint embeddings, we propose a novel approach to learn triple embeddings by combining entities and interactions into a unified representation. Furthermore, traditional methods usually learn triple embeddings from scratch, which cannot take advantage of the rich domain knowledge embedded in pre-trained models, and is also another significant reason for the fact that they cannot distinguish the differences implied by the same entity in the multi-interaction triples. In this paper, we propose a novel fine-tuning based approach to learn better triple embeddings by creating weakly supervised signals from pre-trained knowledge graph embeddings. The method automatically samples triples from knowledge graphs and estimates their pairwise similarity from pre-trained embedding models. The triples are then fed pairwise into a Siamese-like neural architecture, where the triple representation is fine-tuned in the manner bootstrapped by triple similarity scores. Finally, we demonstrate that triple embeddings learned with our method can be readily applied to several downstream applications (e.g. triple classification and triple clustering). We evaluated the proposed method on two open-source drug-protein knowledge graphs constructed from PubMed abstracts, as provided by BioCreative. Our method achieves consistent improvement in both t

关键词： Drug-Protein Interaction Knowledge Graph Embedding Triple Embedding Weakly Supervised Learning

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MPS: A Multiple Poisoned Samples Selection Strategy in Backdoor Attack

MPS: A Multiple Poisoned Samples Selection Strategy in Backd...

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IEEE International Conference on Trust, Security and Privacy in Computing and Communications (TrustCom)

作者： Weihong Zou Shigeng Zhang Weiping Wang Jian Zhang Xuan Liu Schoosl of Computer Science and Engineering Central South University Science and Technology on Parallel and Distributed Processing Laboratory (PDL) College of Computer Science and Electronic Engineering Hunan University

ISBN: (数字)9798350381993

ISBN: (纸本)9798350382006

Recently there has been many studies on backdoor attacks, which involve injecting poisoned samples into the training set in order to embed backdoors into the model. Existing multiple poisoned samples attacks usually randomly select a subset from clean samples to generate the poisoned samples. Filtering-and-Updating Strategy (FUS) has shown that the poisoning efficiency of each poisoned sample is inconsistent and random selection is not optimal. However, FUS does not fully considered the selection of multiple poisoned samples, there are still some issues with the selection of multiple poisoned samples. In this paper, we formulate the selection of multiple types of poisoned samples as a multi-objective optimization problem and proposed a Multiple Poisoned Samples Selection Strategy (MPS) to solve the issue. Unlike FUS, we consider the potential of clean samples that are not selected as to become efficient poisoned samples. Specifically, we use a weight-based contribution approach to calculate the contribution of each sample (clean sample and poisoned sample) during the training process from multiple dimensions. Finally, based on the greedy approach, we retain a subset of samples with the largest contribution in each dimension through iterations. We evaluate the effectiveness of MPS on various attack methods, including BadNet, Blended, ISSBA, and WaNet, as well as benchmark datasets. The experimental results on CIFAR-10 and GTSRB show that MPS can increase the attack strength by 1.45% to 18.34% compared to RSS and 0.43% to 10.84% compared to FUS in multiple poisoned samples attacks, thereby enhancing the stealthiness of the attack. Meanwhile, MPS is suitable for black-box settings, meaning that poisoned samples selected in one setting can be applied to other settings.

关键词： Training Data privacy Closed box Benchmark testing Security Protection Optimization

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Ladder: A Blockchain Model of Low-Overhead Storage 3rd

Ladder: A Blockchain Model of Low-Overhead Storage

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3rd International Conference on Blockchain and Trustworthy Systems, Blocksys 2021

作者： Chen, Peng Zhang, Xunhui Liu, Hui Xiang, Liangliang Shi, Peichang National Key Laboratory of Parallel and Distributed Processing College of Computer Science National University of Defense Technology Changsha410073 China

ISBN: (纸本)9789811679926

Emerging blockchain accounting mechanism allow mutually distributed parties to transport trusted information and ensure the correctness of data. Every blockchain node stores the complete block locally. Although this measure improves security, it causes huge storage overhead. We present Ladder, a multi-level low-overhead storage model for blockchain, which can greatly reduce the storage overhead of nodes while ensuring that the blockchain cannot be tampered easily and the block information is complete. Ladder distinguishes the retrieved frequency and importance of different blocks by value-density, dividing them into Hot-Blocks, Warm-Blocks and Cold-Blocks adopting different storage strategies respectively. Through experimental verification of time and space cost of different storage strategies, Ladder can greatly reduce the local storage overhead of nodes. © 2021, Springer Nature Singapore Pte Ltd.

关键词： Blockchain

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Bi-Objective Scheduling Algorithm for Hybrid Workflow in JointCloud

Bi-Objective Scheduling Algorithm for Hybrid Workflow in Joi...

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IEEE International Conference on Joint Cloud Computing (JCC)

作者： Rui Li Huaimin Wang Peichang Shi National Key Laboratory of Parallel and Distributed Processing College of Computer Science National University of Defense Technology Changsha China State Key Laboratory of Complex & Critica Software Environment College of Computer Science National University of Defense Technology Changsha China

ISBN: (数字)9798350387339

ISBN: (纸本)9798350387346

Big data workflows are widely used in IoT, recommended systems, and real-time vision applications, and they continue to grow in complexity. These hybrid workflows consist of both resource-intensive batch jobs and latency-sensitive stream jobs. Examples include the data analytics workflow, which incorporates batch data transformations and low-latency querying, and the machine learning workflow, which processes stream data feature extraction before performing batch training and low-latency inference. However, existing research on workflow scheduling primarily focuses on either stream or batch workflows, neglecting the efficient scheduling of hybrid workflows that respect their diverse resource requirements and the costly data transfers between *** this article, we propose a hybrid workflow model that defines the optimal placement of hybrid workflows (OHWP) as a bi-objective optimization problem. Our proposed model takes into account parameters related to inter-communication between stream and batch jobs, as well as the heterogeneous resources in JointCloud environment. Additionally, we present OHWP-PS (OHWP on a Pruned Space), a scheduling algorithm for hybrid workflows that minimizes both cost and latency by improving the initial population and dynamically updating the search space. The results demonstrate that the proposed OHWP-PS algorithm is effective and competitive across all experiments.

关键词： Training Scheduling algorithms Machine vision Heuristic algorithms Machine learning Feature extraction Remote working

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Research on accelerating CEE-DGCNN event extraction algorithm based on multi-CPU platform 2

Research on accelerating CEE-DGCNN event extraction algorith...

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2020 2nd International Conference on Electronics and Communication, Network and Computer technology, ECNCT 2020

作者： Li, Yan Jiang, Jinfei Xu, Jinwei Gao, Zikai Dou, Yong Zhou, Haifang Science and Technology on Parallel and Distributed Laboratory National University of Defense Technology Changsha410005 China Department of Computational Science National University of Defense Technology Changsha410005 China

With the development of the Internet, the volume of information is expanding rapidly, and the complex information makes it particularly important to extract information quickly and intelligently. Event extraction algorithm is such a kind of fast and accurate information acquisition algorithm. With the development of deep learning in recent years, deep learning also shines in the field of time extraction. CEE-DGCNN network is an efficient and accurate event extraction algorithm for Chinese text. At present, the acceleration research on deep learning in the academic community mainly focuses on GPU, FPGA and other platforms. In fact, compared with these platforms, CPU is more versatile. Considering that the algorithm should have universality and universality in industrial application, this paper makes an in-depth analysis of CEE-DGCNN algorithm to study its acceleration on CPU. Experiments were carried out on x86 and ARM architectures respectively, and good acceleration effects were achieved. © 2020 Published under licence by IOP Publishing Ltd.

关键词： Extraction

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parallel Implementation of SHA256 on Multizone Heterogeneous Systems

Parallel Implementation of SHA256 on Multizone Heterogeneous...

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IEEE International Conference on Big Data and Cloud Computing (BdCloud)

作者： Yongtao Luo Jie Liu Tiaojie Xiao Chunye Gong Science and Technology on Parallel and Distributed Processing Laboratory Laboratory of Digitizing program for Frontier Equipment National University of Defense Technology Changsha China National Supercomputer Center in Tianjin Tianjin China

SHA-256 plays an important role in widely used applications, such as data security, data integrity, digital signatures, and cryptocurrencies. However, most of the current optimized implementations of SHA-256 are based on CPUs or dedicated hardware, such as ASICs and FPGAs. Consequently, there is a need to explore whether new heterogeneous parallel framework can improve the computational performance of the hash function. To address this issue, we conducted a study on the MT-3000 platform, which is a special architecture processor for the next-generation exascale prototype supercomputer. We proposed MT-SHA256, a heterogeneous multistage parallel implementation for hashing multiple messages on the MT-3000. Combining the architectural features of this processor, we developed an effective solution that significantly improved the computational performance of SHA-256. As a result, MT-SHA256 achieved a maximum throughput of 1045.68 MB/s on a single acceleration core of MT-3000. This is 9.84x higher than the C code implementation on one CPU core of MT-3000. We also performed a scalability test and found that MT-SHA256 achieved a throughput of 98.04 GB/s on a computing node, and extended to 512 nodes (2048 acceleration clusters) on this system with good scalability.

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RuleRAG: Rule-Guided Retrieval-Augmented Generation with Language Models for Question Answering

arXiv

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arXiv 2024年

作者： Chen, Zhongwu Xu, Chengjin Wang, Dingmin Huang, Zhen Dou, Yong Jiang, Xuhui Guo, Jian National Key Laboratory of Parallel and Distributed Computing College of Computer Science and Technology National University of Defense Technology China IDEA Research International Digital Economy Academy Department of Computer Science University of Oxford United Kingdom

Retrieval-augmented generation (RAG) has shown promising potential in knowledge intensive question answering (QA). However, existing approaches only consider the query itself, neither specifying the retrieval preferences for the retrievers nor informing the generators of how to refer to the retrieved documents for the answers, which poses a significant challenge to the QA performance. To address these issues, we propose Rule-guided Retrieval-Augmented Generation with LMs, which explicitly introduces rules for in-context learning (RuleRAG-ICL) to guide retrievers to recall related documents in the directions of rules and uniformly guide generators to reason attributed by the same rules. The combination of queries and rules can be used as fine-tuning data to update retrievers and generators, achieving better rule-based instruction-following ability (RuleRAG-FT). Moreover, most existing RAG datasets were constructed without considering rules and Knowledge Graphs (KGs) are recognized as providing high-quality rules. Therefore, we construct five rule-aware RAG benchmarks for QA, RuleQA, based on KGs to stress the significance of retrieval and reasoning with rules. Experiments on RuleQA demonstrate RuleRAG-ICL improves the retrieval quality of +89.2% in Recall@10 and answer accuracy of +103.1% in Exact Match, and RuleRAG-FT yields more enhancement. In addition, experiments on four existing RAG datasets show RuleRAG is also effective by offering rules in RuleQA to them, further proving the generalization of rule guidance in RuleRAG. Code and RuleQA are at https://***/r/RuleRAG. Copyright © 2024, The Authors. All rights reserved.

关键词： Question answering

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AUXILIARY-TASKS LEARNING FOR PHYSICS-INFORMED NEURAL NETWORK-BASED PARTIAL DIFFERENTIAL EQUATIONS SOLVING

arXiv

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arXiv 2023年

作者： Yan, Junjun Chen, Xinhai Wang, Zhichao Zhou, Enqiang Liu, Jie Science and Technology on Parallel and Distributed Processing Laboratory National University of Defense Technology Changsha410073 China Laboratory of Digitizing Software for Frontier Equipment National University of Defense Technology Changsha410073 China

Physics-informed neural networks (PINNs) have emerged as promising surrogate modes for solving partial differential equations (PDEs). Their effectiveness lies in the ability to capture solution-related features through neural networks. However, original PINNs often suffer from bottlenecks, such as low accuracy and non-convergence, limiting their applicability in complex physical contexts. To alleviate these issues, we proposed auxiliary-task learning-based physics-informed neural networks (ATL-PINNs), which provide four different auxiliary-task learning modes and investigate their performance compared with original PINNs. We also employ the gradient cosine similarity algorithm to integrate auxiliary problem loss with the primary problem loss in ATL-PINNs, which aims to enhance the effectiveness of the auxiliary-task learning modes. To the best of our knowledge, this is the first study to introduce auxiliary-task learning modes in the context of physics-informed learning. We conduct experiments on three PDE problems across different fields and scenarios. Our findings demonstrate that the proposed auxiliary-task learning modes can significantly improve solution accuracy, achieving a maximum performance boost of 96.62% (averaging 28.23%) compared to the original single-task PINNs. The code and dataset are open source at https://***/junjun-yan/ATL-PINN. Copyright © 2023, The Authors. All rights reserved.

关键词： Partial differential equations

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A Fast Adversarial Sample Detection Approach for Industrial Internet-of-Things Applications

A Fast Adversarial Sample Detection Approach for Industrial ...

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International Workshop on Quality of Service

作者： Shigeng Zhang Yudong Li Shuxin Chen Xuan Li Jian Zhang School of Computer Science and Engineering Central South University College of Computer Science and Electronic Engineering Hunan University The Science and Technology on Parallel and Distributed Processing Laboratory (PDL) China

Adversarial attacks reveal the inherent vulnerability of deep neural networks, which face serious security issues for their security. Among them, the attack against the Deep Neural Network (DNN) application used in the Industrial Internet of Things (IIoT) is a key area in adversarial attacks. Adversarial examples generated by attackers by adding human-undetectable interference to legitimate examples may cause models to make wrong decision results, resulting in serious accidents. Many detection technologies have been proposed to mitigate the harm of adversarial examples to neural networks, among which the methods based on the difference of feature attribution between normal examples and adversarial examples show state-of-the-art detection performance, but they suffer from detection efficiency. In this work, we focus on improving the detection efficiency of the feature-attribution-based detection methods. We observe that there is still a significant difference in the feature attribution distribution of a normal image and an adversarial image even only some pixels in the image are processed, which can be verified by utilizing the Kolmogorov-Smirnov test. Based on this observation, we first adopt a variety of strategies to sample partial pixels in an image and then utilize the selected pixels to train a feature-attribution-based detector for detecting adversarial examples. Extensive experiments conducted on four datasets (MNIST, CIFAR-10, SVHN, CIFAR-100) against various attacks proved that the detection efficiency of the accelerated detection method is improved (for example, the average execution time was increased by 8.7 times on CIFAR-10) while the detection performance maintains state-of-the-art.

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ST-PINN: A Self-Training Physics-Informed Neural Network for Partial Differential Equations

arXiv

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arXiv 2023年

作者： Yan, Junjun Chen, Xinhai Wang, Zhichao Zhoui, Enqiang Liu, Jie Science and Technology on Parallel and Distributed Processing Laboratory National University of Defense Technology Changsha410073 China Laboratory of Digitizing Software for Frontier Equipment National University of Defense Technology Changsha410073 China

Partial differential equations (PDEs) are an essential computational kernel in physics and engineering. With the advance of deep learning, physics-informed neural networks (PINNs), as a mesh-free method, have shown great potential for fast PDE solving in various applications. To address the issue of low accuracy and convergence problems of existing PINNs, we propose a self-training physics-informed neural network, ST-PINN. Specifically, ST-PINN introduces a pseudo label based self-learning algorithm during training. It employs governing equation as the pseudo-labeled evaluation index and selects the highest confidence examples from the sample points to attach the pseudo labels. To our best knowledge, we are the first to incorporate a self-training mechanism into physics-informed learning. We conduct experiments on five PDE problems in different fields and scenarios. The results demonstrate that the proposed method allows the network to learn more physical information and benefit convergence. The ST-PINN outperforms existing physics-informed neural network methods and improves the accuracy by a factor of 1.33x-2.54x. The code of ST-PINN is available at GitHub: https://***/junjun-yan/ST-PINN. Copyright © 2023, The Authors. All rights reserved.

关键词： Learning algorithms

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