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Author Correction: Generation of accurate, expandable phylogenomic trees with uDance

Nature biotechnology 2024年第5期42卷 814页

作者： Metin Balaban Yueyu Jiang Qiyun Zhu Daniel McDonald Rob Knight Siavash Mirarab Bioinformatics and Systems Biology Graduate Program University of California San Diego La Jolla CA USA. Department of Electrical and Computer Engineering University of California San Diego La Jolla CA USA. Biodesign Center for Fundamental and Applied Microbiomics Arizona State University Tempe AZ USA. School of Life Sciences Arizona State University Tempe AZ USA. Department of Pediatrics University of California San Diego La Jolla CA USA. Department of Computer Science and Engineering Jacobs School of Engineering University of California San Diego La Jolla CA USA. Department of Bioengineering University of California San Diego La Jolla CA USA. Center for Microbiome Innovation Jacobs School of Engineering University of California San Diego La Jolla CA USA. Department of Electrical and Computer Engineering University of California San Diego La Jolla CA USA. smirarab@ucsd.edu. Department of Computer Science and Engineering Jacobs School of Engineering University of California San Diego La Jolla CA USA. smirarab@ucsd.edu. Center for Microbiome Innovation Jacobs School of Engineering University of California San Diego La Jolla CA USA. smirarab@ucsd.edu.

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Applying surface normal information in drivable area and road anomaly detection for ground mobile robots

arXiv

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arXiv 2020年

作者： Wang, Hengli Fan, Rui Sun, Yuxiang Liu, Ming Department of Electronic and Computer Engineering Hong Kong University of Science and Technology Clear Water Bay Kowloon Hong Kong Jacobs School of Engineering as well as the UCSD Health University of California San Diego San DiegoCA92093 United States

The joint detection of drivable areas and road anomalies is a crucial task for ground mobile robots. In recent years, many impressive semantic segmentation networks, which can be used for pixel-level drivable area and road anomaly detection, have been developed. However, the detection accuracy still needs improvement. Therefore, we develop a novel module named the Normal Inference Module (NIM), which can generate surface normal information from dense depth images with high accuracy and efficiency. Our NIM can be deployed in existing convolutional neural networks (CNNs) to refine the segmentation performance. To evaluate the effectiveness and robustness of our NIM, we embed it in twelve state-of-the-art CNNs. The experimental results illustrate that our NIM can greatly improve the performance of the CNNs for drivable area and road anomaly detection. Furthermore, our proposed NIM-RTFNet ranks 8th on the KITTI road benchmark and exhibits a real-time inference speed. Copyright © 2020, The Authors. All rights reserved.

关键词： Anomaly detection

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Author Correction: Greengenes2 unifies microbial data in a single reference tree

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Nature biotechnology 2024年第5期42卷 813页

作者： Daniel McDonald Yueyu Jiang Metin Balaban Kalen Cantrell Qiyun Zhu Antonio Gonzalez James T Morton Giorgia Nicolaou Donovan H Parks Søren M Karst Mads Albertsen Philip Hugenholtz Todd DeSantis Se Jin Song Andrew Bartko Aki S Havulinna Pekka Jousilahti Susan Cheng Michael Inouye Teemu Niiranen Mohit Jain Veikko Salomaa Leo Lahti Siavash Mirarab Rob Knight Department of Pediatrics University of California San Diego School of Medicine La Jolla CA USA. Department of Electrical and Computer Engineering University of California San Diego La Jolla CA USA. Bioinformatics and Systems Biology Program University of California San Diego La Jolla CA USA. Department of Computer Science and Engineering University of California San Diego La Jolla CA USA. School of Life Sciences Arizona State University Tempe AZ USA. Biodesign Center for Fundamental and Applied Microbiomics Arizona State University Tempe AZ USA. Biostatistics & Bioinformatics Branch Eunice Kennedy Shriver National Institute of Child Health and Human Development National Institutes of Health Bethesda MD USA. Halicioglu Data Science Institute University of California San Diego La Jolla CA USA. Australian Centre for Ecogenomics School of Chemistry and Molecular Biosciences The University of Queensland St Lucia Queensland Australia. Department of Obstetrics and Gynecology Columbia University New York NY USA. Department of Chemistry and Bioscience Aalborg University Aalborg Denmark. Department of Informatics Second Genome Brisbane CA USA. Center for Microbiome Innovation Jacobs School of Engineering University of California San Diego La Jolla CA USA. Finnish Institute for Health and Welfare Helsinki Finland. Institute for Molecular Medicine Finland FIMM-HiLIFE Helsinki Finland. Division of Cardiology Brigham and Women's Hospital Boston MA USA. Cedars-Sinai Medical Center Los Angeles CA USA. Cambridge Baker Systems Genomics Initiative Baker Heart and Diabetes Institute Melbourne Victoria Australia. Cambridge Baker Systems Genomics Initiative Department of Public Health and Primary Care University of Cambridge Cambridge UK. Division of Medicine Turku University Hospital and University of Turku Turku Finland. Sapient Bioanalytics LLC San Diego CA USA. Department of Computing University of Turku Turku Finland. Department of Pediatrics Uni

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Correction to: Compositional and genetic alterations in Graves' disease gut microbiome reveal specific diagnostic biomarkers

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The ISME journal 2022年第4期16卷 1201页

作者： Qiyun Zhu Qiangchuan Hou Shi Huang Qianying Ou Dongxue Huo Yoshiki Vázquez-Baeza Chaoping Cen Victor Cantu Mehrbod Estaki Haibo Chang Pedro Belda-Ferre Ho-Cheol Kim Kaining Chen Rob Knight Jiachao Zhang Department of Pediatrics University of California San Diego La Jolla CA USA. Center for Microbiome Innovation Jacobs School of Engineering University of California San Diego La Jolla CA USA. School of Food Science and Engineering Hainan University Haikou China. Department of Endocrinology Hainan General Hospital Hainan Affiliated Hospital of Hainan Medical University Haikou China. Hubei Provincial Engineering and Technology Research Center for Food Ingredients Hubei University of Arts and Science Xiangyang Hubei province China. Key Laboratory of Food Nutrition and Functional Food of Hainan Province Haikou China. Department of Bioengineering University of California San Diego La Jolla CA USA. Scalable Knowledge Intelligence IBM Research-Almaden San Jose CA USA. School of Food Science and Engineering Hainan University Haikou China. kainch@***. Department of Endocrinology Hainan General Hospital Hainan Affiliated Hospital of Hainan Medical University Haikou China. kainch@***. Department of Pediatrics University of California San Diego La Jolla CA USA. robknight@ucsd.edu. Center for Microbiome Innovation Jacobs School of Engineering University of California San Diego La Jolla CA USA. robknight@ucsd.edu. Department of Bioengineering University of California San Diego La Jolla CA USA. robknight@ucsd.edu. Department of Computer Science and Engineering University of California San Diego La Jolla CA USA. robknight@ucsd.edu. Department of Pediatrics University of California San Diego La Jolla CA USA. zhjch321123@***. School of Food Science and Engineering Hainan University Haikou China. zhjch321123@***. Key Laboratory of Food Nutrition and Functional Food of Hainan Province Haikou China. zhjch321123@***.

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Author Correction: Enhancing untargeted metabolomics using metadata-based source annotation

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Nature biotechnology 2023年第11期41卷 1656页

作者： Julia M Gauglitz Kiana A West Wout Bittremieux Candace L Williams Kelly C Weldon Morgan Panitchpakdi Francesca Di Ottavio Christine M Aceves Elizabeth Brown Nicole C Sikora Alan K Jarmusch Cameron Martino Anupriya Tripathi Michael J Meehan Kathleen Dorrestein Justin P Shaffer Roxana Coras Fernando Vargas Lindsay DeRight Goldasich Tara Schwartz MacKenzie Bryant Gregory Humphrey Abigail J Johnson Katharina Spengler Pedro Belda-Ferre Edgar Diaz Daniel McDonald Qiyun Zhu Emmanuel O Elijah Mingxun Wang Clarisse Marotz Kate E Sprecher Daniela Vargas-Robles Dana Withrow Gail Ackermann Lourdes Herrera Barry J Bradford Lucas Maciel Mauriz Marques Juliano Geraldo Amaral Rodrigo Moreira Silva Flavio Protasio Veras Thiago Mattar Cunha Rene Donizeti Ribeiro Oliveira Paulo Louzada-Junior Robert H Mills Paulina K Piotrowski Stephanie L Servetas Sandra M Da Silva Christina M Jones Nancy J Lin Katrice A Lippa Scott A Jackson Rima Kaddurah Daouk Douglas Galasko Parambir S Dulai Tatyana I Kalashnikova Curt Wittenberg Robert Terkeltaub Megan M Doty Jae H Kim Kyung E Rhee Julia Beauchamp-Walters Kenneth P Wright Maria Gloria Dominguez-Bello Mark Manary Michelli F Oliveira Brigid S Boland Norberto Peporine Lopes Monica Guma Austin D Swafford Rachel J Dutton Rob Knight Pieter C Dorrestein Collaborative Mass Spectrometry Innovation Center University of California San Diego La Jolla CA USA. Skaggs School of Pharmacy and Pharmaceutical Sciences University of California San Diego La Jolla CA USA. Beckman Center for Conservation Research San Diego Zoo Wildlife Alliance Escondido CA USA. Center for Microbiome Innovation Joan and Irwin Jacobs School of Engineering University of California San Diego La Jolla CA USA. Division of Biological Sciences University of California San Diego La Jolla CA USA. Department of Pediatrics School of Medicine University of California San Diego La Jolla CA USA. Bioinformatics and Systems Biology Program University of California San Diego La Jolla CA USA. Division of Rheumatology Allergy & Immunology Department of Medicine University of California San Diego La Jolla CA USA. Division of Epidemiology and Community Health School of Public Health University of Minnesota Minneapolis MN USA. Department of Integrative Physiology University of Colorado Boulder Boulder CO USA. Department of Population Health Sciences University of Wisconsin-Madison Madison WI USA. Servicio Autónomo Centro Amazónico de Investigación y Control de Enfermedades Tropicales Simón Bolívar Puerto Ayacucho Amazonas Venezuela. Department of Pediatrics Billings Clinic Billings MT USA. Department of Animal Science Michigan State University East Lansing MI USA. Department of Pharmacology Ribeirão Preto Medicinal School Center of Research in Inflammatory Diseases University of São Paulo Ribeirão Preto Sao Paolo Brazil. Multidisciplinary Health Institute Federal University of Bahia Vitória da Conquista Bahia Brazil. NPPNS Department of Biomolecular Sciences School of Pharmaceutical Sciences of Ribeirão Preto University of São Paulo Ribeirão Preto Sao Paolo Brazil. Department of Internal Medicine Ribeirão Preto Medical School Center of Research in Inflammatory Diseases University of São Paulo Ribeirão Preto Sao Paolo Brazil. Department

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Erratum to: Weakly supervised learning of biomedical information extraction from curated data

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BMC bioinformatics 2016年第1期17卷 84页

作者： Suvir Jain Kashyap R Tumkur Tsung-Ting Kuo Shitij Bhargava Gordon Lin Chun-Nan Hsu Department of Computer Science and Engineering Jacobs School of Engineering University of California 9500 Gilman Drive La Jolla San Diego 92093 USA. Department of Biomedical Informatics School of Medicine University of California 9500 Gilman Drive La Jolla San Diego 92093 USA. Department of Biomedical Informatics School of Medicine University of California 9500 Gilman Drive La Jolla San Diego 92093 USA. chunnan@ucsd.edu.

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Erratum to: Network-driven plasma proteomics expose molecular changes in the Alzheimer's brain

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Molecular neurodegeneration 2016年第1期11卷 42页

作者： Philipp A Jaeger Kurt M Lucin Markus Britschgi Badri Vardarajan Ruo-Pan Huang Elizabeth D Kirby Rachelle Abbey Bradley F Boeve Adam L Boxer Lindsay A Farrer NiCole Finch Neill R Graff-Radford Elizabeth Head Matan Hofree Ruochun Huang Hudson Johns Anna Karydas David S Knopman Andrey Loboda Eliezer Masliah Ramya Narasimhan Ronald C Petersen Alexei Podtelezhnikov Suraj Pradhan Rosa Rademakers Chung-Huan Sun Steven G Younkin Bruce L Miller Trey Ideker Tony Wyss-Coray Department of Neurology and Neurological Sciences Stanford University School of Medicine Stanford CA USA. pjaeger@ucsd.edu. Institute of Chemistry and Biochemistry Free University Berlin Berlin Germany. pjaeger@ucsd.edu. Departments of Bioengineering and Medicine University of California La Jolla San Diego CA USA. pjaeger@ucsd.edu. Department of Neurology and Neurological Sciences Stanford University School of Medicine Stanford CA USA. Present address: Biology Department Eastern Connecticut State University Willimantic CT USA. Present address: Roche Pharma Research and Early Development NORD DTA Roche Innovation Center Basel Basel Switzerland. Department of Medicine (Biomedical Genetics) Boston University Schools of Medicine Boston MA USA. RayBiotech Guangzhou China. RayBiotech Norcrosse GA USA. Department of Neurology Mayo Clinic Rochester MN USA. Department of Neurology University of California San Francisco San Francisco CA USA. Departments of Neurology Ophthalmology Genetics and Genomics Epidemiology and Biostatistics Boston University Schools of Medicine and Public Health Boston MA USA. Department of Neuroscience Mayo Clinic Jacksonville FL USA. Department of Neurology Mayo Clinic Jacksonville FL USA. Departments of Pharmacology and Nutritional Sciences and Sanders-Brown Center on Aging University of Kentucky Lexington KY USA. Department of Computer Science and Engineering University of California La Jolla San Diego CA USA. Genetics and Pharmacogenomics Merck Research Laboratories West Point PA USA. Department of Pathology University of California La Jolla San Diego CA USA. Departments of Bioengineering and Medicine University of California La Jolla San Diego CA USA. Department of Neurology and Neurological Sciences Stanford University School of Medicine Stanford CA USA. twc@stanford.edu. Center for Tissue Regeneration Repair and Restoration VA Palo Alto Health Care System Palo Alto CA USA. twc@stanford.edu.

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The OptIPuter and Its Applications

The OptIPuter and Its Applications

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Digest of the LEOS Summer Topical Meeting

作者： Smarr, Larry UCSD Jacobs School's Department of Computer Science and Engineering California Institute for Telecommunications and Information Technology (Calit2) United States

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The OptIPuter and its applications

The OptIPuter and its applications

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LEOS Summer Topical Meetings

作者： Larry Smarr UCSD Jacobs Schools Department of Computer Science and Engineering California Institute of Telecommunications and Information Technology USA

The NSF-funded OptIPuter project [see *** and special issue of Future Generation computer Systems (FGCS), Volume 25, Issue 2, February 2009] has been exploring for the last six years how user-controlled 10Gbps dedicated lightpaths (lambdas) can provide direct access to global data repositories, scientific instruments, and computational resources from the researchers' Linux clusters in their campus laboratories. These clusters are reconfigured as "OptlPortals," providing the end users with local scalable visualization, computing, and storage. Using the 10 Gbps lightpaths available over the National Lambda Rail (NLR) and the Global Lambda Integrated Facility (GLIF), this new distributed architecture creates an end-to-end "OptlPlatform" for data-intensive research.

关键词： High definition video Moon Collaboration Cameras NASA Visualization Collaborative work Application software Jacobian matrices computer science

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