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Attention Guided Enhancement Network for Weakly Supervised Semantic Segmentation

Chinese Journal of Electronics 2023年第4期32卷 896-907页

作者： ZHANG Zhe WANG Bilin YU Zhezhou ZHAO Fengzhi College of Computer Science and Technology Jilin University Key Laboratory for Symbol Computation and Knowledge Engineering of National Education Ministry

Weakly supervised semantic segmentation using only image-level labels is critical since it alleviates the need for expensive pixel-level labels. Most cuttingedge methods adopt two-step solutions that learn to produce pseudo-ground-truth using only image-level labels and then train off-the-shelf fully supervised semantic segmentation network with these pseudo labels. Although these methods have made significant progress, they also increase the complexity of the model and training. In this paper, we propose a one-step approach for weakly supervised image semantic segmentation—attention guided enhancement network(AGEN), which produces pseudopixel-level labels under the supervision of image-level labels and trains the network to generate segmentation masks in an end-to-end manner. Particularly, we employ class activation maps(CAM) produced by different layers of the classification branch to guide the segmentation branch to learn spatial and semantic ***, the CAM produced by the lower layer can capture the complete object region but with many ***, the self-attention module is proposed to enhance object regions adaptively and suppress irrelevant object regions, further boosting the segmentation *** on the Pascal VOC 2012 dataset demonstrate that AGEN outperforms alternative state-of-the-art weakly supervised semantic segmentation methods exclusively relying on image-level labels.

关键词： Training Annotations Semantic segmentation Scalability Semantics Benchmark testing Boosting

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A Novel Method for Prediction of Protein Domain Using Distance-Based Maximal Entropy

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Journal of Bionic engineering 2008年第3期5卷 215-223页

作者： Shu-xue Zou Yan-xin Huang Yan Wang Chun-guang Zhou Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education College of Computer Science and Technology Jilin University Changchun 130012 P. R. China

Detecting the boundaries of protein domains is an important and challenging task in both experimental and computational structural biology. In this paper, a promising method for detecting the domain structure of a protein from sequence information alone is presented. The method is based on analyzing multiple sequence alignments derived from a database search. Multiple measures are defined to quantify the domain information content of each position along the sequence. Then they are combined into a single predictor using support vector machine. What is more important, the domain detection is first taken as an imbal- anced data learning problem. A novel undersampling method is proposed on distance-based maximal entropy in the feature space of Support Vector Machine （SVM）. The overall precision is about 80%. Simulation results demonstrate that the method can help not only in predicting the complete 3D structure of a protein but also in the machine learning system on general im- balanced datasets.

关键词： protein domain boundary SVM imbalanced data learning distance-based maximal entropy

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Prior-guided dual-stage diabetic retinopathy grading model based on feature collaboration of lesion and vascular structure

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Expert Systems with Applications 2025年 285卷

作者： Guo, Xiaoxin Yang, Guangqi Xu, Chenfangqian Dong, Hongliang Hu, Xiaoying Che, Songtian Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education Jilin University 2699 Qianjin Street Changchun130012 China College of Computer Science and Technology Jilin University 2699 Qianjin Street Changchun130012 China Ophthalmology Department Bethune First Hospital of Jilin University Changchun Jilin130021 China Ophthalmology Department Bethune Second Hospital of Jilin University Changchun Jilin130041 China

In order to fully utilize lesion features and vascular structure and solve the problem of class imbalance, diabetes retinopathy (DR) grading is modeled as a dual-stage task, and the prior-guided dual-stage diabetes retinopathy grading model is proposed by designing an end-to-end hierarchical framework, consisting of XE-Net and MFC-Net. The former uses vascular structure from color fundus images as prior knowledge to guide the classification of proliferative diabetic retinopathy (PDR) and non-PDR;the latter further classifies non-PDR images using color fundus images with four types of segmented lesions. The core of MFC-Net is the feature collaboration block (FCB) for multi-classification tasks, which is proposed to facilitate effective collaboration between global and local features. In addition, a class-balanced (CB) loss weight is also introduced to address the common class imbalance problem in DR datasets. The experimental results on two publicly available datasets, DDR and IDRiD show that the proposed model has significant advantages. © 2025 Elsevier Ltd

关键词： Image segmentation

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Crossed-Time Delay Neural Network for Speaker Recognition 1

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27th International Conference on MultiMedia Modeling, MMM 2021

作者： Chen, Liang Liang, Yanchun Shi, Xiaoshu Zhou, You Wu, Chunguo Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education College of Computer Science and Technology Jilin University Changchun130012 China Zhuhai Laboratory of Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education School of Computer Zhuhai College of Jilin University Zhuhai519041 China

ISBN: (数字)9783030678326

ISBN: (纸本)9783030678319

Time Delay Neural Network (TDNN) is a well-performing structure for deep neural network-based speaker recognition systems. In this paper we introduce a novel structure, named Crossed-Time Delay Neural Network (CTDNN) to enhance the performance of current TDNN for speaker recognition. Inspired by the multi-filters setting of convolution layers from convolution neural networks, we set multiple time delay units with different context size at the bottom layer and construct a multilayer parallel network. The proposed CTDNN gives significant improvements over original TDNN on both speaker verification and identification tasks. It outperforms in VoxCeleb1 dataset in verification experiment with a 2.6% absolute Equal Error Rate improvement. In few shots condition, CTDNN reaches 90.4% identification accuracy, which doubles the identification accuracy of original TDNN. We also compare the proposed CTDNN with another new variant of TDNN, Factorized-TDNN, which shows that our model has a 36% absolute identification accuracy improvement under few shots condition. Moreover, the proposed CTDNN can handle training with a larger batch more efficiently and hence, utilize calculation resources economically. © 2021, Springer Nature Switzerland AG.

关键词： Convolution

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Recognizing the agent's goals incrementally:planning graph as a basis

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中国高等学校学术文摘·计算机科学 2007年第1期1卷 26-36页

作者： SUN Jigui YIN Minghao College of Computer Science Jilin UniversityChangchun 130012China Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education Changchun 130012China College of Computer Science Jilin UniversityChangchun 130012China Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education Changchun 130012China College of Computer Northeast Normal UniversityChangchun 130024China

Plan recognition,the inverse problem of plan synthesis,is important wherever a system is expected to produce a kind of cooperative or competitive *** plan recognizers,however,suffer the problem of acquisition and hand-coding a larger plan *** paper is aims to show that modern planning techniques can help build plan recognition systems without suffering such ***,we show that the planning graph,which is an important component of the classical planning system Graphplan,can be used as an implicit,dynamic planning library to represent actions,plans and *** also show that modern plan generating technology can be used to find valid plans in this *** this sense,this method can be regarded as a bridge that connects these two research *** and theoretical results also show that the method is efficient and scalable.

关键词： Graphplan plan recognition constraints automated planning

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Inference and learning in hybrid probabilistic network

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中国高等学校学术文摘·计算机科学 2007年第4期1卷 429-435页

作者： WANG Limin WANG Xuecheng LI Xiongfei Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education Jilin UniversityChangchun 130012China The Institute of Information Spreading Engineering Changchun University of TechnologyChangchun 130012China

This paper proposed a novel hybrid probabilistic network,which is a good tradeoff between the model complexity and learnability in *** relaxes the conditional independence assumptions of Naive Bayes while still permitting efficient inference and *** studies on a set of natural domains prove its clear advantages with respect to the generalization ability.

关键词： hybrid probabilistic network conditional independence assumption Bayesian network probabilistic neural network

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SEOE:an option graph based semantically embedding method for prenatal depression detection

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Frontiers of Computer Science 2024年第6期18卷 245-258页

作者： Xiaosong HAN Mengchen CAO Dong XU Xiaoyue FENG Yanchun LIANG Xiaoduo LANG Renchu GUAN College of Computer Science and Technology Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of EducationJilin UniversityChangchun 130012China Department of Electrical Engineering and Computer Science and Christopher S.Bond Life Sciences Center University of MissouriColumbiaMO 65211USA Department of Computer Science and Technology Zhuhai Laboratory of Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of EducationZhuhai College of Science and TechnologyZhuhai 519041China Jilin Provincial Institute of Population Science and Technology Changchun 130000China

Prenatal depression,which can affect pregnant women’s physical and psychological health and cause postpartum depression,is increasing ***,it is essential to detect prenatal depression early and conduct an attribution *** studies have used questionnaires to screen for prenatal depression,but the existing methods lack *** diagnose the early signs of prenatal depression and identify the key factors that may lead to prenatal depression from questionnaires,we present the semantically enhanced option embedding(SEOE)model to represent questionnaire *** can quantitatively determine the relationship and patterns between options and *** first quantifies options and resorts them,gathering options with little difference,since Word2Vec is highly dependent on *** resort task is transformed into an optimization problem involving the traveling salesman ***,all questionnaire samples are used to train the options’vector using ***,an LSTM and GRU fused model incorporating the cycle learning rate is constructed to detect whether a pregnant woman is suffering from *** verify the model,we compare it with other deep learning and traditional machine learning *** experiment results show that our proposed model can accurately identify pregnant women with depression and reach an F1 score of *** most relevant factors of depression found by SEOE are also verified in the *** addition,our model is of low computational complexity and strong generalization,which can be widely applied to other questionnaire analyses of psychiatric disorders.

关键词： questionnaire analyses text classification graph representation learning traveling salesman problem prenatal depression

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Mapping integrity constraint ontology to relational databases

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The Journal of China Universities of Posts and Telecommunications 2010年第6期17卷 113-121页

作者： OUYANG Dan-tong College of Computer Science and Technology Jilin University Changchun 130012 China Key Laboratory of Symbol Computation and Knowledge Engineering Ministry of Education Jilin University Changchun 130012 China

Integrity constraint is a formula that checks whether all necessary information has been explicitly provided. It can be added into ontology to guarantee the data-centric application. In this paper,a set of constraint axioms called IC-mapping axioms are stated. Based on these axioms,a special ontology with integrity constraint,which is adapted to map ontology knowledge to data in relational databases,is defined. It＇s generated through our checking and modification. Making use of the traditional mapping approaches,it can be mapped to relational databases as a normal ontology. Unlike what in the past,a novel mapping approach named IC-based mapping is proposed in accordance with such special ontology. The detailed algorithm is put forward and compared with other existing approaches used in Semantic Web applications. The result shows that our method is advanced to the traditional approaches.

关键词： Semantic Web integrity constraint ontology relational database

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PNESR-DDI: An Effective Drug-Drug Interaction Prediction Model Based on Pretraining Method and Enhanced Subgraph Reconstruction

PNESR-DDI: An Effective Drug-Drug Interaction Prediction Mod...

引用

2024 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2024

作者： Chen, Ke Han, Xiaosong Li, Xiaoran Liang, Yanchun Xu, Dong Guan, Renchu Jilin University Key Laboratory for Symbol Computation and Knowledge Engineering of National Education Ministry College of Software Changchun China Jilin University Key Laboratory for Symbol Computation and Knowledge Engineering of National Education Ministry College of Computer Science and Technology Changchun China Zhuhai College of Science and Technology Zhuhai Laboratory of Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education School of Computer Science Zhuhai China University of Missouri Christopher S. Bond Life Sciences Center Department of Electrical Engineering and Computer Science Columbia United States

ISBN: (纸本)9798350386226

Drug-Drug Interaction (DDI) task plays a crucial role in clinical treatment and drug development. Recently, deep learning methods have been successfully applied for DDI prediction. However, training deep learning models always need large amount of data, while known DDIs are scarce. To address this challenge, a graph neural network-based DDI prediction model named PNESR-DDI is proposed, which compensates for the lack of DDIs by enriching drug representations. First, to obtain initial node representations that incorporate rich semantic information from the biomedical knowledge graph (KG), a link prediction pre-training method on external KG is proposed in the node embedding pre-training module. Then, considering the large scale of the KG, subgraph extraction for the target drug pairs is introduced to reduce noise and decrease computational complexity in the subgraph anchoring module. After that, the subgraph is updated, and node similarities are propagated in the subgraph reconstruction module. Based on the node similarity scores, the subgraph is pruned and reconstructed, which adjusts node representations to be more conducive to DDI prediction. Finally, the drug embeddings, subgraph representations, and drug fingerprint features are concatenated to predict DDIs. PNESRDDI is evaluated on two benchmark DDI datasets: DrugBank and TWOSIDES. Experiment results show that PNESR-DDI achieves better performance than baselines. Ablation results validate the effectiveness of the pre-training method and the adaptive subgraph reconstruction strategy. © 2024 IEEE.

关键词： knowledge graph

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COVID-19 knowledge Graph for Drug and Vaccine Development

COVID-19 Knowledge Graph for Drug and Vaccine Development

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2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021

作者： Huang, Lan Guan, Hongrui Liang, Yanchun Guan, Renchu Feng, Xiaoyue Jilin University The Key Laboratory for Symbolic Computation and Knowledge Engineering of the Ministry of Education College of Computer Science and Technology Changchun China Zhuhai College of Science and Technology Zhuhai Sub Laboratory Key Laboratory of Symbolic Computation and Knowledge Engineering of the Ministry of Education Zhuhai China

ISBN: (纸本)9781665401265

The worldwide spread of COVID-19 has made a severe impact on human health and life. It has shown rapid propagation, long in vitro survival, and a long incubation period. More seriously, COVID-19 is more susceptible to variation, as it is an RNA virus. Mutations of COVID-19 have been reported in multiple countries worldwide, which makes drug and vaccine development a significant challenge. To search for potential drugs and vaccines and reveal the atlas of COVID-19 evolution, we extract information from massive unstructured data and construct a COVID-19 knowledge graph using the COVID-19 data. Based on machine learning approaches, we infer and predict novel coronavirus pneumonia-related diseases, drug action targets, etc. to speculate on new and more effective treatment methods. In addition, to study transcriptome of SARS-CoV-2, new ideas can be provided to biomedical experts with flexible responses to viral variation. An in-depth analysis of the COVID-19 pathomechanism at the pharmaceutical, genetic, and protein levels provides effective means and tools for novel coronavirus pneumonia vaccines, drug development, and therapeutic program design. © 2021 IEEE.

关键词： COVID-19

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